Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 PHGDH-210ENST00000641115 1638 ntBASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 AL512625.2-201ENST00000417533 625 ntBASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
TCRBV7S3A2A0A539 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 HLA-G-202ENST00000376815 851 ntBASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 HLA-G-203ENST00000376818 1127 ntBASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 AL050303.2-201ENST00000619798 666 ntBASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.13■□□□□ 0.81
TCRBV7S3A2A0A539 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 AC023632.3-201ENST00000521633 145 ntBASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TCRBV7S3A2A0A539 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 AC073111.5-205ENST00000641717 521 ntBASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TCRBV7S3A2A0A539 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms