Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AL033519.1-201ENST00000407266 307 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 NPM1P23-201ENST00000440193 849 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 PA2G4P1-201ENST00000442248 1197 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC093870.1-201ENST00000506837 213 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC090115.2-201ENST00000548060 883 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 MIR4732-201ENST00000581873 76 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AL078623.1-201ENST00000602702 907 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 MIR6885-201ENST00000612241 66 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC116165.3-201ENST00000614524 400 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC005899.6-201ENST00000620729 297 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 MRPL57P1-201ENST00000621486 265 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 AC137056.2-201ENST00000624055 1958 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SKA3Q8IX90 HSPD1P8-201ENST00000400121 1658 ntBASIC5.72□□□□□ -1.49
SKA3Q8IX90 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.72□□□□□ -1.49
SKA3Q8IX90 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
SKA3Q8IX90 AP002512.4-202ENST00000641599 4530 ntBASIC5.71□□□□□ -1.49
SKA3Q8IX90 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.71□□□□□ -1.49
SKA3Q8IX90 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.71□□□□□ -1.49
SKA3Q8IX90 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SKA3Q8IX90 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
SKA3Q8IX90 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SKA3Q8IX90 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SKA3Q8IX90 AC232271.1-201ENST00000602455 2715 ntBASIC5.71□□□□□ -1.49
SKA3Q8IX90 AC074141.1-201ENST00000588129 2995 ntBASIC5.71□□□□□ -1.49
SKA3Q8IX90 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
SKA3Q8IX90 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SKA3Q8IX90 AC010624.4-201ENST00000597606 1351 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 RNA5SP188-201ENST00000362916 129 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 SNORD94-201ENST00000386037 137 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 AL023284.3-201ENST00000407767 334 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 UBTFL2-201ENST00000411859 1191 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 GAPDHP37-201ENST00000442317 968 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC092824.1-201ENST00000483524 576 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC022206.1-201ENST00000495947 347 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 NPM1P27-201ENST00000502784 830 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC131392.1-201ENST00000506490 633 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC093664.1-201ENST00000511779 289 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 AC211486.4-201ENST00000621495 113 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 AL121936.2-201ENST00000641935 662 ntBASIC5.71□□□□□ -1.5
SKA3Q8IX90 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SKA3Q8IX90 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
SKA3Q8IX90 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms