Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 AL020997.1-201ENST00000446554 349 ntBASIC6.06□□□□□ -1.44
SOX3P41225 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 IGLV3-6-201ENST00000523937 250 ntBASIC6.06□□□□□ -1.44
SOX3P41225 OR7E158P-201ENST00000524483 910 ntBASIC6.06□□□□□ -1.44
SOX3P41225 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC6.06□□□□□ -1.44
SOX3P41225 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.06□□□□□ -1.44
SOX3P41225 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.06□□□□□ -1.44
SOX3P41225 AL356986.1-201ENST00000604085 341 ntBASIC6.06□□□□□ -1.44
SOX3P41225 AL139041.1-201ENST00000605480 610 ntBASIC6.06□□□□□ -1.44
SOX3P41225 AC019257.2-201ENST00000605539 497 ntBASIC6.06□□□□□ -1.44
SOX3P41225 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.06□□□□□ -1.44
SOX3P41225 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.06□□□□□ -1.44
SOX3P41225 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SOX3P41225 AC023245.2-201ENST00000530760 2978 ntBASIC6.06□□□□□ -1.44
SOX3P41225 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
SOX3P41225 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AC022613.3-201ENST00000560740 1346 ntBASIC6.05□□□□□ -1.44
SOX3P41225 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SOX3P41225 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 FAM32BP-201ENST00000344033 333 ntBASIC6.05□□□□□ -1.44
SOX3P41225 RNU1-84P-201ENST00000365447 164 ntBASIC6.05□□□□□ -1.44
SOX3P41225 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 AP003170.5-201ENST00000397185 335 ntBASIC6.05□□□□□ -1.44
SOX3P41225 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.05□□□□□ -1.44
SOX3P41225 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 MRPS21P5-201ENST00000417885 231 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.05□□□□□ -1.44
SOX3P41225 RPL19P11-201ENST00000495944 589 ntBASIC6.05□□□□□ -1.44
SOX3P41225 SCARNA5-201ENST00000516201 276 ntBASIC6.05□□□□□ -1.44
SOX3P41225 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AP003033.2-201ENST00000528901 805 ntBASIC6.05□□□□□ -1.44
SOX3P41225 TDGP1-201ENST00000543961 1229 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AL162632.2-201ENST00000553933 399 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.05□□□□□ -1.44
SOX3P41225 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.05□□□□□ -1.44
SOX3P41225 AC133552.4-201ENST00000576103 676 ntBASIC6.05□□□□□ -1.44
SOX3P41225 RN7SL208P-201ENST00000577964 296 ntBASIC6.05□□□□□ -1.44
SOX3P41225 SYPL1P2-201ENST00000582878 727 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AC011500.1-201ENST00000601963 469 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AC097467.4-201ENST00000605504 141 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AL589743.6-201ENST00000611025 117 ntBASIC6.05□□□□□ -1.44
SOX3P41225 U1.41-201ENST00000617626 165 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AP003789.1-201ENST00000617737 605 ntBASIC6.05□□□□□ -1.44
SOX3P41225 AC012653.2-201ENST00000621880 420 ntBASIC6.05□□□□□ -1.44
SOX3P41225 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.05□□□□□ -1.44
SOX3P41225 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.05□□□□□ -1.44
SOX3P41225 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 SMG1P5-202ENST00000529428 4219 ntBASIC6.05□□□□□ -1.44
SOX3P41225 SMG1P2-201ENST00000566127 4221 ntBASIC6.05□□□□□ -1.44
SOX3P41225 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.05□□□□□ -1.44
SOX3P41225 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SOX3P41225 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.05□□□□□ -1.44
SOX3P41225 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.04□□□□□ -1.44
SOX3P41225 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.04□□□□□ -1.44
SOX3P41225 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 RPL5P20-201ENST00000403848 896 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms