Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 LRRC37A6P-202ENST00000448648 5444 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.73□□□□□ -1.17
COL5A3P25940 AC005839.1-201ENST00000624148 3213 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
COL5A3P25940 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC7.73□□□□□ -1.17
COL5A3P25940 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 MEP1B-201ENST00000269202 2312 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 MIR433-201ENST00000384837 93 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AL096829.1-201ENST00000413677 457 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AL596448.1-201ENST00000415024 392 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.72□□□□□ -1.17
COL5A3P25940 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 PFN1P6-201ENST00000476786 399 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 RN7SL727P-201ENST00000482164 296 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 CYCSP22-201ENST00000517555 339 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 IGKV2-18-201ENST00000522607 343 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC7.72□□□□□ -1.17
COL5A3P25940 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 BNIP3P32-201ENST00000600015 554 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.72□□□□□ -1.17
COL5A3P25940 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 U3.7-201ENST00000363668 216 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 HMGB1P20-201ENST00000402555 677 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 NPM1P4-201ENST00000414095 812 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.72□□□□□ -1.17
COL5A3P25940 FMO7P-201ENST00000436045 768 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AC008410.1-201ENST00000483777 339 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 RNA5SP34-201ENST00000516887 130 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.72□□□□□ -1.17
COL5A3P25940 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.72□□□□□ -1.17
COL5A3P25940 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 MIR4700-201ENST00000578311 74 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AC141002.1-201ENST00000607025 279 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AL445670.1-201ENST00000618889 801 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 AC079776.5-201ENST00000641920 211 ntBASIC7.72□□□□□ -1.17
COL5A3P25940 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL5A3P25940 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL5A3P25940 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.72□□□□□ -1.17
COL5A3P25940 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL5A3P25940 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.71□□□□□ -1.17
COL5A3P25940 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC7.71□□□□□ -1.17
COL5A3P25940 ZSCAN31-203ENST00000414429 3551 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
COL5A3P25940 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC7.71□□□□□ -1.17
COL5A3P25940 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
COL5A3P25940 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
COL5A3P25940 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
COL5A3P25940 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 RNU105B-201ENST00000364478 208 ntBASIC7.71□□□□□ -1.18
COL5A3P25940 RNU11-6P-201ENST00000391127 133 ntBASIC7.71□□□□□ -1.18
COL5A3P25940 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC7.71□□□□□ -1.18
COL5A3P25940 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC7.71□□□□□ -1.18
COL5A3P25940 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC7.71□□□□□ -1.18
COL5A3P25940 RPS15AP30-201ENST00000420976 390 ntBASIC7.71□□□□□ -1.18
COL5A3P25940 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC7.71□□□□□ -1.18
COL5A3P25940 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.71□□□□□ -1.18
COL5A3P25940 AC020916.2-201ENST00000591242 360 ntBASIC7.71□□□□□ -1.18
COL5A3P25940 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.71□□□□□ -1.18
COL5A3P25940 CU639417.4-201ENST00000623928 207 ntBASIC7.71□□□□□ -1.18
COL5A3P25940 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.71□□□□□ -1.18
COL5A3P25940 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL5A3P25940 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL5A3P25940 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms