Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC006509.1-201ENST00000420788 634 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 CDC42P6-201ENST00000421246 576 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
HDAC4P56524 VN1R96P-201ENST00000446052 858 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.9□□□□□ -1.3
HDAC4P56524 RNU6-775P-201ENST00000459318 96 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 RN7SL37P-201ENST00000490461 307 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6.9□□□□□ -1.3
HDAC4P56524 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.9□□□□□ -1.3
HDAC4P56524 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
HDAC4P56524 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.9□□□□□ -1.3
HDAC4P56524 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.9□□□□□ -1.3
HDAC4P56524 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.9□□□□□ -1.3
HDAC4P56524 RPL29P33-201ENST00000587474 316 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.9□□□□□ -1.3
HDAC4P56524 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.9□□□□□ -1.3
HDAC4P56524 AC005479.3-201ENST00000602790 431 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AL049840.5-201ENST00000602827 552 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AL356986.1-201ENST00000604085 341 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC097641.3-201ENST00000613523 464 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC004241.2-201ENST00000614562 444 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AL357153.4-201ENST00000620487 1016 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 RAB28P4-201ENST00000622233 665 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC005514.1-201ENST00000623521 208 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 SNX18P10-201ENST00000625014 519 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 AC073488.9-201ENST00000631601 754 ntBASIC6.9□□□□□ -1.3
HDAC4P56524 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDAC4P56524 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
HDAC4P56524 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.9□□□□□ -1.31
HDAC4P56524 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.9□□□□□ -1.31
HDAC4P56524 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 CASC19-228ENST00000641414 1684 ntBASIC6.9□□□□□ -1.31
HDAC4P56524 AC004023.1-201ENST00000561473 1744 ntBASIC6.9□□□□□ -1.31
HDAC4P56524 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 AC013488.1-201ENST00000526618 1838 ntBASIC6.9□□□□□ -1.31
HDAC4P56524 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
HDAC4P56524 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.9□□□□□ -1.31
HDAC4P56524 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.89□□□□□ -1.31
HDAC4P56524 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.89□□□□□ -1.31
HDAC4P56524 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 PPIAP24-201ENST00000328558 471 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 AC026310.1-201ENST00000396004 378 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.89□□□□□ -1.31
HDAC4P56524 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HDAC4P56524 AL590399.4-201ENST00000436561 601 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 GAPDHP33-201ENST00000443168 1013 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.89□□□□□ -1.31
HDAC4P56524 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.89□□□□□ -1.31
HDAC4P56524 SNORA58-201ENST00000505219 137 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.89□□□□□ -1.31
HDAC4P56524 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.89□□□□□ -1.31
HDAC4P56524 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.89□□□□□ -1.31
HDAC4P56524 AC005899.6-201ENST00000620729 297 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 AC114546.4-201ENST00000624413 369 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 AL117378.2-201ENST00000622916 1337 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HDAC4P56524 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 AC139426.3-201ENST00000605648 2059 ntBASIC6.89□□□□□ -1.31
HDAC4P56524 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.89□□□□□ -1.31
HDAC4P56524 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.89□□□□□ -1.31
HDAC4P56524 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HDAC4P56524 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 AC022905.1-201ENST00000503430 3048 ntBASIC6.88□□□□□ -1.31
HDAC4P56524 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.88□□□□□ -1.31
HDAC4P56524 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.88□□□□□ -1.31
HDAC4P56524 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.88□□□□□ -1.31
HDAC4P56524 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.88□□□□□ -1.31
HDAC4P56524 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.88□□□□□ -1.31
HDAC4P56524 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.88□□□□□ -1.31
HDAC4P56524 API5P1-201ENST00000424316 1510 ntBASIC6.88□□□□□ -1.31
HDAC4P56524 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HDAC4P56524 RNU1-5P-201ENST00000362684 144 ntBASIC6.88□□□□□ -1.31
HDAC4P56524 RNA5SP140-201ENST00000364524 92 ntBASIC6.88□□□□□ -1.31
HDAC4P56524 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms