Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL050335.1-201ENST00000396909 869 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 SDHDP6-201ENST00000414693 480 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 AC073909.1-201ENST00000447112 999 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.83□□□□□ -1.16
COL5A3P25940 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 OR7A1P-202ENST00000641542 1158 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC7.82□□□□□ -1.16
COL5A3P25940 AC131392.2-201ENST00000505635 4332 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC7.82□□□□□ -1.16
COL5A3P25940 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC7.82□□□□□ -1.16
COL5A3P25940 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 OFD1P10Y-201ENST00000434110 1433 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.82□□□□□ -1.16
COL5A3P25940 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.82□□□□□ -1.16
COL5A3P25940 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
COL5A3P25940 RNA5SP234-201ENST00000363916 119 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 RNA5SP132-201ENST00000364725 118 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 AL391422.1-201ENST00000402155 436 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 AL513325.1-201ENST00000417716 1034 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC7.82□□□□□ -1.16
COL5A3P25940 BX119321.1-201ENST00000428912 797 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 VN1R38P-201ENST00000450265 887 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 AC011225.1-201ENST00000457751 369 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 ATP5LP3-201ENST00000514223 304 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 MYL6-213ENST00000549017 502 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC7.82□□□□□ -1.16
COL5A3P25940 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC7.82□□□□□ -1.16
COL5A3P25940 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.82□□□□□ -1.16
COL5A3P25940 AL136131.3-201ENST00000607600 188 ntBASIC7.82□□□□□ -1.16
COL5A3P25940 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC7.82□□□□□ -1.16
COL5A3P25940 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC7.82□□□□□ -1.16
COL5A3P25940 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL5A3P25940 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC7.82□□□□□ -1.16
COL5A3P25940 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.81□□□□□ -1.16
COL5A3P25940 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 BMS1P17-202ENST00000416720 316 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 NMD3P2-201ENST00000421815 761 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 FTH1P10-202ENST00000430907 550 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 MGAT2P1-201ENST00000449718 797 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 LECT2-205ENST00000522943 574 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 OR6M2P-201ENST00000529831 871 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 AC027279.4-201ENST00000624371 2072 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL5A3P25940 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
COL5A3P25940 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 RPL34P3-201ENST00000421454 338 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 OR7A15P-201ENST00000449848 1009 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 RPS27AP2-201ENST00000457576 465 ntBASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms