Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MELK-207ENST00000536860 2342 ntTSL 2 BASIC6.15□□□□□ -1.43
COL5A1P20908 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL5A1P20908 RNA5SP242-201ENST00000364171 118 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.15□□□□□ -1.43
COL5A1P20908 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 CFL1P4-201ENST00000451536 498 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 AL133351.3-201ENST00000454998 193 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 Y_RNA.667-201ENST00000516212 107 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.15□□□□□ -1.43
COL5A1P20908 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 RPA2P1-201ENST00000556557 721 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.15□□□□□ -1.43
COL5A1P20908 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.15□□□□□ -1.43
COL5A1P20908 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.15□□□□□ -1.43
COL5A1P20908 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.15□□□□□ -1.43
COL5A1P20908 AC013731.1-201ENST00000604340 883 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 AC069234.4-201ENST00000621276 412 ntBASIC6.15□□□□□ -1.43
COL5A1P20908 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.15□□□□□ -1.43
COL5A1P20908 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A1P20908 AC008627.1-201ENST00000517511 1704 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
COL5A1P20908 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.14□□□□□ -1.43
COL5A1P20908 DUTP4-201ENST00000424782 475 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A1P20908 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.14□□□□□ -1.43
COL5A1P20908 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 CST12P-201ENST00000457644 362 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 AC011476.1-201ENST00000466725 307 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.14□□□□□ -1.43
COL5A1P20908 AP003396.4-201ENST00000527574 265 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 AC068305.2-201ENST00000550567 1205 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.14□□□□□ -1.43
COL5A1P20908 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 AC012653.2-201ENST00000621880 420 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
COL5A1P20908 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A1P20908 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.14□□□□□ -1.43
COL5A1P20908 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL5A1P20908 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A1P20908 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A1P20908 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A1P20908 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL5A1P20908 OR13C1P-202ENST00000641378 2919 ntBASIC6.14□□□□□ -1.43
COL5A1P20908 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 MIR323A-201ENST00000362199 86 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 U3.43-201ENST00000410734 213 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A1P20908 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 RN7SL714P-201ENST00000487050 298 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A1P20908 CR383658.1-201ENST00000514609 734 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A1P20908 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A1P20908 MIR4489-201ENST00000578869 62 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.13□□□□□ -1.43
COL5A1P20908 AC126175.1-201ENST00000617041 758 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A1P20908 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A1P20908 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A1P20908 NEK2P4-201ENST00000425793 1329 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 AL512310.3-201ENST00000547023 1335 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms