Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC146944.3-201ENST00000509969 371 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 ST13P6-201ENST00000522430 1102 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC090888.2-201ENST00000559765 1144 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 RN7SL366P-201ENST00000577957 292 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AP005329.3-201ENST00000609924 686 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC087683.2-201ENST00000611384 326 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AL591926.1-201ENST00000620542 217 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AP001885.1-201ENST00000621658 558 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 MIR6806-201ENST00000622141 64 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC012321.1-201ENST00000561622 1588 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.02□□□□□ -1.28
USP39Q53GS9 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
USP39Q53GS9 FANCD2P2-201ENST00000437591 1400 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 RPS2P45-201ENST00000469997 2057 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
USP39Q53GS9 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 OR10D3-201ENST00000318666 1030 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
USP39Q53GS9 SNORA64.3-201ENST00000365647 134 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 RBBP4P4-201ENST00000398588 1289 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 METTL5-204ENST00000409340 472 ntTSL 5 BASIC7.02□□□□□ -1.29
USP39Q53GS9 PCNPP4-201ENST00000414817 517 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 ETF1P1-206ENST00000427296 984 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 NFYAP1-201ENST00000431953 972 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC114878.1-201ENST00000441166 358 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 RPS3AP49-201ENST00000472161 790 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 AL158068.1-201ENST00000506116 616 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC7.02□□□□□ -1.29
USP39Q53GS9 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 MTCYBP44-201ENST00000514835 823 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 IGLVV-66-201ENST00000523818 341 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 PPIAP6-201ENST00000557078 499 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC7.02□□□□□ -1.29
USP39Q53GS9 MT1CP-201ENST00000567054 174 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC096708.2-201ENST00000577676 512 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 AL355333.1-201ENST00000605632 279 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC7.02□□□□□ -1.29
USP39Q53GS9 AC127071.1-201ENST00000624997 712 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 AC027559.1-201ENST00000636288 271 ntBASIC7.02□□□□□ -1.29
USP39Q53GS9 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
USP39Q53GS9 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC7.02□□□□□ -1.29
USP39Q53GS9 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
USP39Q53GS9 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 SALL4P7-201ENST00000555779 3120 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
USP39Q53GS9 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
USP39Q53GS9 XKRY2-202ENST00000623874 1581 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 XKRY-202ENST00000624960 1581 ntBASIC7.01□□□□□ -1.29
USP39Q53GS9 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms