Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC8.22□□□□□ -1.09
LIG1P18858 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
LIG1P18858 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
LIG1P18858 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.09
LIG1P18858 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC8.21□□□□□ -1.09
LIG1P18858 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
LIG1P18858 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.09
LIG1P18858 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC8.21□□□□□ -1.09
LIG1P18858 AC067942.1-201ENST00000488045 1493 ntBASIC8.21□□□□□ -1.09
LIG1P18858 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC8.21□□□□□ -1.09
LIG1P18858 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC8.21□□□□□ -1.09
LIG1P18858 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC8.21□□□□□ -1.09
LIG1P18858 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
LIG1P18858 AC005261.2-201ENST00000593427 4258 ntBASIC8.21□□□□□ -1.1
LIG1P18858 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 SULT1C4-202ENST00000409309 1045 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 MTND4P24-201ENST00000424002 397 ntBASIC8.21□□□□□ -1.1
LIG1P18858 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 MUPP-201ENST00000438111 566 ntBASIC8.21□□□□□ -1.1
LIG1P18858 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 RN7SL791P-201ENST00000467868 295 ntBASIC8.21□□□□□ -1.1
LIG1P18858 RN7SL688P-201ENST00000471754 275 ntBASIC8.21□□□□□ -1.1
LIG1P18858 RPL5P12-201ENST00000477071 851 ntBASIC8.21□□□□□ -1.1
LIG1P18858 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC8.21□□□□□ -1.1
LIG1P18858 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 AC108103.1-201ENST00000511286 446 ntBASIC8.21□□□□□ -1.1
LIG1P18858 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC8.21□□□□□ -1.1
LIG1P18858 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 UBTFL9-201ENST00000534504 1148 ntBASIC8.21□□□□□ -1.1
LIG1P18858 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC8.21□□□□□ -1.1
LIG1P18858 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC8.21□□□□□ -1.1
LIG1P18858 RN7SL697P-201ENST00000582484 299 ntBASIC8.21□□□□□ -1.1
LIG1P18858 IGLJCOR18-201ENST00000584002 424 ntBASIC8.21□□□□□ -1.1
LIG1P18858 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 AC010620.1-201ENST00000601088 1102 ntBASIC8.21□□□□□ -1.1
LIG1P18858 AC087468.1-201ENST00000604365 630 ntBASIC8.21□□□□□ -1.1
LIG1P18858 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC8.21□□□□□ -1.1
LIG1P18858 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 AC022306.2-201ENST00000617563 647 ntBASIC8.21□□□□□ -1.1
LIG1P18858 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 CASC19-222ENST00000641321 1173 ntBASIC8.21□□□□□ -1.1
LIG1P18858 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC8.21□□□□□ -1.1
LIG1P18858 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC8.21□□□□□ -1.1
LIG1P18858 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC8.21□□□□□ -1.1
LIG1P18858 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC8.21□□□□□ -1.1
LIG1P18858 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
LIG1P18858 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC8.21□□□□□ -1.1
LIG1P18858 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC8.21□□□□□ -1.1
LIG1P18858 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC8.2□□□□□ -1.1
LIG1P18858 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC8.2□□□□□ -1.1
LIG1P18858 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 RNA5SP260-201ENST00000363849 111 ntBASIC8.2□□□□□ -1.1
LIG1P18858 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
LIG1P18858 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 RN7SKP236-201ENST00000410635 284 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC8.2□□□□□ -1.1
LIG1P18858 CLIC4P3-201ENST00000422221 752 ntBASIC8.2□□□□□ -1.1
LIG1P18858 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 TRAPPC13P1-201ENST00000435991 1062 ntBASIC8.2□□□□□ -1.1
LIG1P18858 NPM1P48-201ENST00000436002 853 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AC006994.1-201ENST00000438212 839 ntBASIC8.2□□□□□ -1.1
LIG1P18858 SNRPFP2-201ENST00000440710 251 ntBASIC8.2□□□□□ -1.1
LIG1P18858 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC8.2□□□□□ -1.1
LIG1P18858 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC8.2□□□□□ -1.1
LIG1P18858 MTND2P28-201ENST00000457540 1044 ntBASIC8.2□□□□□ -1.1
LIG1P18858 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 MTND4LP2-201ENST00000502312 285 ntBASIC8.2□□□□□ -1.1
LIG1P18858 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
LIG1P18858 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms