Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC119674.1-204ENST00000641348 1343 ntBASIC10.54□□□□□ -0.72
CUX1P39880 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC10.54□□□□□ -0.72
CUX1P39880 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC10.54□□□□□ -0.72
CUX1P39880 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
CUX1P39880 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
CUX1P39880 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC10.53□□□□□ -0.72
CUX1P39880 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC10.53□□□□□ -0.72
CUX1P39880 ATP5LP3-201ENST00000514223 304 ntBASIC10.53□□□□□ -0.72
CUX1P39880 OLR1-210ENST00000544577 924 ntTSL 5 BASIC10.53□□□□□ -0.72
CUX1P39880 ZNF322P1-201ENST00000568013 1209 ntBASIC10.53□□□□□ -0.72
CUX1P39880 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC10.53□□□□□ -0.72
CUX1P39880 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC10.53□□□□□ -0.72
CUX1P39880 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC10.53□□□□□ -0.72
CUX1P39880 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 AC011416.1-201ENST00000514947 1732 ntBASIC10.53□□□□□ -0.72
CUX1P39880 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC10.53□□□□□ -0.72
CUX1P39880 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 CEBPZOS-204ENST00000402297 3158 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
CUX1P39880 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC10.53□□□□□ -0.72
CUX1P39880 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 RPL35AP3-201ENST00000414680 288 ntBASIC10.53□□□□□ -0.72
CUX1P39880 MARK2P12-201ENST00000420129 585 ntBASIC10.53□□□□□ -0.72
CUX1P39880 DUTP4-201ENST00000424782 475 ntBASIC10.53□□□□□ -0.72
CUX1P39880 MORF4L1P5-201ENST00000433352 961 ntBASIC10.53□□□□□ -0.72
CUX1P39880 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC10.53□□□□□ -0.72
CUX1P39880 ZNF619P1-201ENST00000446539 752 ntBASIC10.53□□□□□ -0.72
CUX1P39880 AL445665.1-202ENST00000452436 324 ntBASIC10.53□□□□□ -0.72
CUX1P39880 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC10.53□□□□□ -0.72
CUX1P39880 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC10.53□□□□□ -0.72
CUX1P39880 AC007225.2-201ENST00000562529 256 ntBASIC10.53□□□□□ -0.72
CUX1P39880 COX6CP7-201ENST00000597056 208 ntBASIC10.53□□□□□ -0.72
CUX1P39880 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CUX1P39880 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC10.52□□□□□ -0.72
CUX1P39880 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC10.52□□□□□ -0.72
CUX1P39880 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
CUX1P39880 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CUX1P39880 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC10.52□□□□□ -0.73
CUX1P39880 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 VN1R110P-201ENST00000438988 971 ntBASIC10.52□□□□□ -0.73
CUX1P39880 AC021074.2-201ENST00000468434 172 ntBASIC10.52□□□□□ -0.73
CUX1P39880 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC10.52□□□□□ -0.73
CUX1P39880 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC10.52□□□□□ -0.73
CUX1P39880 DCN-209ENST00000546745 1026 ntTSL 3 BASIC10.52□□□□□ -0.73
CUX1P39880 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC10.52□□□□□ -0.73
CUX1P39880 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC10.52□□□□□ -0.73
CUX1P39880 AC116667.2-201ENST00000641075 823 ntBASIC10.52□□□□□ -0.73
CUX1P39880 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CUX1P39880 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC10.51□□□□□ -0.73
CUX1P39880 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC10.51□□□□□ -0.73
CUX1P39880 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC10.51□□□□□ -0.73
CUX1P39880 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
CUX1P39880 FUNDC2P3-201ENST00000334716 533 ntBASIC10.51□□□□□ -0.73
CUX1P39880 AC245060.4-201ENST00000413293 1121 ntBASIC10.51□□□□□ -0.73
CUX1P39880 AL139156.3-201ENST00000454802 394 ntBASIC10.51□□□□□ -0.73
CUX1P39880 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC10.51□□□□□ -0.73
CUX1P39880 LECT2-205ENST00000522943 574 ntTSL 3 BASIC10.51□□□□□ -0.73
CUX1P39880 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC10.51□□□□□ -0.73
CUX1P39880 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC10.51□□□□□ -0.73
CUX1P39880 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
CUX1P39880 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC10.51□□□□□ -0.73
CUX1P39880 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CUX1P39880 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CUX1P39880 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC10.51□□□□□ -0.73
CUX1P39880 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC10.51□□□□□ -0.73
CUX1P39880 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
CUX1P39880 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
CUX1P39880 RN7SKP293-201ENST00000411389 296 ntBASIC10.5□□□□□ -0.73
CUX1P39880 GAS5-202ENST00000414075 413 ntTSL 2 BASIC10.5□□□□□ -0.73
CUX1P39880 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC10.5□□□□□ -0.73
CUX1P39880 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC10.5□□□□□ -0.73
CUX1P39880 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC10.5□□□□□ -0.73
CUX1P39880 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
CUX1P39880 AC008429.4-201ENST00000521201 182 ntBASIC10.5□□□□□ -0.73
CUX1P39880 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC10.5□□□□□ -0.73
CUX1P39880 AL021707.7-201ENST00000607991 416 ntBASIC10.5□□□□□ -0.73
CUX1P39880 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms