Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.9□□□□□ -1.14
COL5A3P25940 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.9□□□□□ -1.14
COL5A3P25940 AC092865.4-201ENST00000477936 615 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.9□□□□□ -1.14
COL5A3P25940 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC7.9□□□□□ -1.14
COL5A3P25940 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC7.9□□□□□ -1.14
COL5A3P25940 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC7.9□□□□□ -1.14
COL5A3P25940 MIR3189-201ENST00000578735 73 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AC092681.3-201ENST00000609463 678 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AL049767.1-202ENST00000637826 242 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AC116667.2-201ENST00000641075 823 ntBASIC7.9□□□□□ -1.14
COL5A3P25940 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC7.9□□□□□ -1.14
COL5A3P25940 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC7.9□□□□□ -1.14
COL5A3P25940 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL5A3P25940 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC7.9□□□□□ -1.14
COL5A3P25940 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
COL5A3P25940 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
COL5A3P25940 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC7.9□□□□□ -1.15
COL5A3P25940 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.15
COL5A3P25940 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
COL5A3P25940 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC7.9□□□□□ -1.15
COL5A3P25940 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL5A3P25940 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
COL5A3P25940 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL5A3P25940 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC7.89□□□□□ -1.15
COL5A3P25940 KIF4CP-201ENST00000422742 1279 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 AC245884.2-201ENST00000426257 404 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 FTLP8-201ENST00000446770 267 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 AL445466.1-201ENST00000448432 357 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 SNX18P26-201ENST00000458433 740 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC7.89□□□□□ -1.15
COL5A3P25940 AC074386.1-201ENST00000476560 767 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC7.89□□□□□ -1.15
COL5A3P25940 AL137067.2-201ENST00000621202 131 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
COL5A3P25940 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 BIN2P1-201ENST00000504996 1530 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC7.89□□□□□ -1.15
COL5A3P25940 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.89□□□□□ -1.15
COL5A3P25940 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
COL5A3P25940 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.89□□□□□ -1.15
COL5A3P25940 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 AP002833.3-201ENST00000625075 2265 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.89□□□□□ -1.15
COL5A3P25940 COPS8P2-201ENST00000473228 627 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.89□□□□□ -1.15
COL5A3P25940 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.89□□□□□ -1.15
COL5A3P25940 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.89□□□□□ -1.15
COL5A3P25940 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.89□□□□□ -1.15
COL5A3P25940 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.89□□□□□ -1.15
COL5A3P25940 AC245014.3-201ENST00000618589 347 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 AC104964.2-201ENST00000562242 4641 ntBASIC7.89□□□□□ -1.15
COL5A3P25940 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL5A3P25940 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.88□□□□□ -1.15
COL5A3P25940 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7.88□□□□□ -1.15
COL5A3P25940 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 AC245060.4-201ENST00000413293 1121 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 Z93019.1-201ENST00000416450 973 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 AL355433.1-201ENST00000422804 300 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC7.88□□□□□ -1.15
COL5A3P25940 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC7.88□□□□□ -1.15
COL5A3P25940 AL136038.1-201ENST00000497246 351 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 NENFP3-201ENST00000503735 313 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC7.88□□□□□ -1.15
COL5A3P25940 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.88□□□□□ -1.15
COL5A3P25940 AC015818.6-201ENST00000584274 634 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7.88□□□□□ -1.15
COL5A3P25940 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.88□□□□□ -1.15
COL5A3P25940 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
COL5A3P25940 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms