Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
HOXD4P09016 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HOXD4P09016 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXD4P09016 AL358876.1-201ENST00000453364 1075 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 PSMA6P2-201ENST00000457574 686 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXD4P09016 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXD4P09016 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXD4P09016 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 AL590032.1-201ENST00000604920 252 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 AC005828.7-201ENST00000607331 556 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 MIR6806-201ENST00000622141 64 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXD4P09016 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 ZNF806-201ENST00000438300 1774 ntBASIC6.11□□□□□ -1.43
HOXD4P09016 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXD4P09016 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXD4P09016 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXD4P09016 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 SMG1P5-202ENST00000529428 4219 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 SMG1P2-201ENST00000566127 4221 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
HOXD4P09016 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 RNA5SP308-201ENST00000362532 115 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 SNORA64.3-201ENST00000365647 134 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 SNORA70.9-201ENST00000384370 135 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 VIM2P-201ENST00000402383 1294 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 AL663061.1-201ENST00000416625 580 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 RPL5P10-201ENST00000445207 894 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.1□□□□□ -1.43
HOXD4P09016 CTSLP6-201ENST00000458273 1002 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 RPL37P23-201ENST00000492641 294 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms