Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 Z99916.2-201ENST00000604037 246 ntBASIC21■□□□□ 0.95
CDH9Q9ULB4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21■□□□□ 0.95
CDH9Q9ULB4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21■□□□□ 0.95
CDH9Q9ULB4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH9Q9ULB4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CDH9Q9ULB4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH9Q9ULB4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21■□□□□ 0.95
CDH9Q9ULB4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDH9Q9ULB4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH9Q9ULB4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDH9Q9ULB4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDH9Q9ULB4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 AL135905.2-201ENST00000584934 1404 ntBASIC20.98■□□□□ 0.95
CDH9Q9ULB4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 AC012618.2-201ENST00000428058 849 ntBASIC20.98■□□□□ 0.95
CDH9Q9ULB4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDH9Q9ULB4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 RPS2P55-201ENST00000397318 883 ntBASIC20.97■□□□□ 0.95
CDH9Q9ULB4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 AC107956.1-201ENST00000494359 873 ntBASIC20.97■□□□□ 0.95
CDH9Q9ULB4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 AC233702.5-201ENST00000584107 538 ntBASIC20.97■□□□□ 0.95
CDH9Q9ULB4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 LINC01006-201ENST00000333319 2292 ntBASIC20.97■□□□□ 0.95
CDH9Q9ULB4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDH9Q9ULB4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.96■□□□□ 0.95
CDH9Q9ULB4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CDH9Q9ULB4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms