Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PRKY-204ENST00000533551 1019 ntBASIC20.05■□□□□ 0.8
LHX3Q9UBR4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LHX3Q9UBR4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 AC112907.3-201ENST00000577781 2400 ntBASIC20.04■□□□□ 0.8
LHX3Q9UBR4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.04■□□□□ 0.8
LHX3Q9UBR4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LHX3Q9UBR4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LHX3Q9UBR4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.02■□□□□ 0.8
LHX3Q9UBR4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.02■□□□□ 0.8
LHX3Q9UBR4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.02■□□□□ 0.79
LHX3Q9UBR4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 AP001271.2-201ENST00000624018 1556 ntBASIC20.01■□□□□ 0.79
LHX3Q9UBR4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 NBPF21P-201ENST00000425093 1451 ntBASIC20.01■□□□□ 0.79
LHX3Q9UBR4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LHX3Q9UBR4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
LHX3Q9UBR4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LHX3Q9UBR4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LHX3Q9UBR4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20■□□□□ 0.79
LHX3Q9UBR4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LHX3Q9UBR4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20■□□□□ 0.79
LHX3Q9UBR4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LHX3Q9UBR4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
LHX3Q9UBR4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20■□□□□ 0.79
LHX3Q9UBR4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20■□□□□ 0.79
LHX3Q9UBR4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20■□□□□ 0.79
LHX3Q9UBR4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms