Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.94■□□□□ 0.78
DKK3Q9UBP4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
DKK3Q9UBP4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 AL162377.1-201ENST00000618844 1793 ntBASIC19.93■□□□□ 0.78
DKK3Q9UBP4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
DKK3Q9UBP4 NBPF21P-201ENST00000425093 1451 ntBASIC19.92■□□□□ 0.78
DKK3Q9UBP4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 AC008550.1-201ENST00000511500 884 ntBASIC19.92■□□□□ 0.78
DKK3Q9UBP4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DKK3Q9UBP4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 PHGDH-210ENST00000641115 1638 ntBASIC19.91■□□□□ 0.78
DKK3Q9UBP4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 TFP1-202ENST00000475455 1573 ntBASIC19.91■□□□□ 0.78
DKK3Q9UBP4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.91■□□□□ 0.78
DKK3Q9UBP4 AL391422.3-201ENST00000603791 2761 ntBASIC19.9■□□□□ 0.78
DKK3Q9UBP4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 KRT16P5-201ENST00000455284 522 ntBASIC19.9■□□□□ 0.78
DKK3Q9UBP4 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 AC018553.1-201ENST00000616682 1458 ntBASIC19.9■□□□□ 0.78
DKK3Q9UBP4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 AL512408.1-201ENST00000569378 2000 ntBASIC19.9■□□□□ 0.78
DKK3Q9UBP4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DKK3Q9UBP4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
DKK3Q9UBP4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 MIR718-201ENST00000390190 70 ntBASIC19.89■□□□□ 0.77
DKK3Q9UBP4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
DKK3Q9UBP4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms