Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 AC073111.5-205ENST00000641717 521 ntBASIC17.71■□□□□ 0.43
VSX1Q9NZR4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 TREX1-205ENST00000625293 1783 ntBASIC17.71■□□□□ 0.43
VSX1Q9NZR4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.71■□□□□ 0.42
VSX1Q9NZR4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.71■□□□□ 0.42
VSX1Q9NZR4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VSX1Q9NZR4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 AC007952.6-201ENST00000573168 2673 ntBASIC17.7■□□□□ 0.42
VSX1Q9NZR4 AC003957.1-201ENST00000625108 2673 ntBASIC17.7■□□□□ 0.42
VSX1Q9NZR4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 AP001271.2-201ENST00000624018 1556 ntBASIC17.7■□□□□ 0.42
VSX1Q9NZR4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.7■□□□□ 0.42
VSX1Q9NZR4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 CDCA4P2-201ENST00000441182 718 ntBASIC17.69■□□□□ 0.42
VSX1Q9NZR4 IKBKGP1-201ENST00000612193 1073 ntBASIC17.69■□□□□ 0.42
VSX1Q9NZR4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX1Q9NZR4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 MIR935-201ENST00000401179 91 ntBASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VSX1Q9NZR4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VSX1Q9NZR4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms