Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SIX2Q9NPC8 MYC-209ENST00000641252 345 ntBASIC21.33■■□□□ 1.01
SIX2Q9NPC8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.33■■□□□ 1
SIX2Q9NPC8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.33■■□□□ 1
SIX2Q9NPC8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.33■■□□□ 1
SIX2Q9NPC8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SIX2Q9NPC8 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.32■■□□□ 1
SIX2Q9NPC8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.32■■□□□ 1
SIX2Q9NPC8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.32■■□□□ 1
SIX2Q9NPC8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 AC005829.2-201ENST00000571422 1056 ntBASIC21.32■■□□□ 1
SIX2Q9NPC8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 AC092666.2-201ENST00000613287 246 ntBASIC21.32■■□□□ 1
SIX2Q9NPC8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.32■■□□□ 1
SIX2Q9NPC8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.32■■□□□ 1
SIX2Q9NPC8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.32■■□□□ 1
SIX2Q9NPC8 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX2Q9NPC8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.31■■□□□ 1
SIX2Q9NPC8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 AC073210.2-201ENST00000430369 194 ntBASIC21.31■■□□□ 1
SIX2Q9NPC8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.31■■□□□ 1
SIX2Q9NPC8 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.31■■□□□ 1
SIX2Q9NPC8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 AC018553.1-201ENST00000616682 1458 ntBASIC21.31■■□□□ 1
SIX2Q9NPC8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
SIX2Q9NPC8 AC116351.2-201ENST00000606540 1585 ntBASIC21.31■■□□□ 1
SIX2Q9NPC8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX2Q9NPC8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.3■■□□□ 1
SIX2Q9NPC8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.3■■□□□ 1
SIX2Q9NPC8 AC005332.7-201ENST00000614046 2005 ntBASIC21.3■■□□□ 1
SIX2Q9NPC8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 SLC29A4P1-201ENST00000398760 971 ntBASIC21.3■■□□□ 1
SIX2Q9NPC8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.3■■□□□ 1
SIX2Q9NPC8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.3■■□□□ 1
SIX2Q9NPC8 AL138781.1-201ENST00000566567 1274 ntBASIC21.3■■□□□ 1
SIX2Q9NPC8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.3■■□□□ 1
SIX2Q9NPC8 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.3■■□□□ 1
SIX2Q9NPC8 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.3■■□□□ 1
SIX2Q9NPC8 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.3■■□□□ 1
SIX2Q9NPC8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SIX2Q9NPC8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.3■■□□□ 1
SIX2Q9NPC8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX2Q9NPC8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
SIX2Q9NPC8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.29■■□□□ 1
SIX2Q9NPC8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.29■■□□□ 1
SIX2Q9NPC8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.29■■□□□ 1
SIX2Q9NPC8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.29■■□□□ 1
SIX2Q9NPC8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX2Q9NPC8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms