Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 AC073130.3-201ENST00000624389 2278 ntBASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 MTDHP1-201ENST00000605323 784 ntBASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 AC124283.5-201ENST00000624661 1809 ntBASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 AL391422.3-201ENST00000603791 2761 ntBASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 BX119927.1-201ENST00000636596 1552 ntBASIC19.66■□□□□ 0.74
TRIM39Q9HCM9 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 LINC01006-201ENST00000333319 2292 ntBASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM39Q9HCM9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
TRIM39Q9HCM9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 AL121906.2-201ENST00000621597 723 ntBASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM39Q9HCM9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AC098590.1-201ENST00000468126 897 ntBASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 PRKY-204ENST00000533551 1019 ntBASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AC142381.4-202ENST00000563973 229 ntBASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM39Q9HCM9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM39Q9HCM9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms