Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 PGM5P4-201ENST00000421970 445 ntBASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.2■□□□□ 0.82
TRIM56Q9BRZ2 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MCRIP2P1-201ENST00000394346 511 ntBASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 AC004911.1-201ENST00000416316 871 ntBASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 BID-214ENST00000617586 542 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM56Q9BRZ2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM56Q9BRZ2 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 AC093787.1-201ENST00000450396 207 ntBASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 AC105020.6-201ENST00000621523 1217 ntBASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM56Q9BRZ2 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 TMEM179-206ENST00000616017 1645 ntBASIC20.16■□□□□ 0.82
TRIM56Q9BRZ2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms