Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS35Q96QK1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS35Q96QK1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 AC099778.1-201ENST00000568593 1911 ntBASIC19.68■□□□□ 0.74
VPS35Q96QK1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 AC124283.5-201ENST00000624661 1809 ntBASIC19.68■□□□□ 0.74
VPS35Q96QK1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 PHGDH-210ENST00000641115 1638 ntBASIC19.68■□□□□ 0.74
VPS35Q96QK1 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
VPS35Q96QK1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS35Q96QK1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 KRT18P29-201ENST00000397031 1267 ntBASIC19.67■□□□□ 0.74
VPS35Q96QK1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VPS35Q96QK1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS35Q96QK1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 AC116351.2-201ENST00000606540 1585 ntBASIC19.66■□□□□ 0.74
VPS35Q96QK1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 AC233263.1-201ENST00000578059 224 ntBASIC19.66■□□□□ 0.74
VPS35Q96QK1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms