Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28AQ8IWP9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 AC007225.1-201ENST00000566331 1836 ntBASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28AQ8IWP9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 OR6D1P-202ENST00000641007 5290 ntBASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 AC137630.3-201ENST00000607245 391 ntBASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28AQ8IWP9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 KRT125P-201ENST00000546827 989 ntBASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC28AQ8IWP9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC28AQ8IWP9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms