Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VRK3Q8IV63 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 AC125437.2-201ENST00000625180 2167 ntBASIC19.43■□□□□ 0.7
VRK3Q8IV63 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.43■□□□□ 0.7
VRK3Q8IV63 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VRK3Q8IV63 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.42■□□□□ 0.7
VRK3Q8IV63 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.41■□□□□ 0.7
VRK3Q8IV63 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.41■□□□□ 0.7
VRK3Q8IV63 AC026366.1-201ENST00000488803 879 ntBASIC19.41■□□□□ 0.7
VRK3Q8IV63 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VRK3Q8IV63 AC018553.1-201ENST00000616682 1458 ntBASIC19.41■□□□□ 0.7
VRK3Q8IV63 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.41■□□□□ 0.7
VRK3Q8IV63 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 ESRRAP1-201ENST00000400596 1257 ntBASIC19.4■□□□□ 0.7
VRK3Q8IV63 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VRK3Q8IV63 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.4■□□□□ 0.7
VRK3Q8IV63 AC116351.2-201ENST00000606540 1585 ntBASIC19.4■□□□□ 0.7
VRK3Q8IV63 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
VRK3Q8IV63 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VRK3Q8IV63 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VRK3Q8IV63 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VRK3Q8IV63 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
VRK3Q8IV63 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.39■□□□□ 0.69
VRK3Q8IV63 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VRK3Q8IV63 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.39■□□□□ 0.69
VRK3Q8IV63 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VRK3Q8IV63 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VRK3Q8IV63 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VRK3Q8IV63 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.39■□□□□ 0.69
VRK3Q8IV63 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.39■□□□□ 0.69
VRK3Q8IV63 AC233263.1-201ENST00000578059 224 ntBASIC19.39■□□□□ 0.69
VRK3Q8IV63 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms