Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC40Q4G0X9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 AL158211.5-201ENST00000623583 2518 ntBASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC40Q4G0X9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC40Q4G0X9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 BX276092.2-201ENST00000417668 665 ntBASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 RAP2CP1-201ENST00000605103 478 ntBASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CCDC40Q4G0X9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 CROCCP5-201ENST00000436658 830 ntBASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC40Q4G0X9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 AC023632.3-201ENST00000521633 145 ntBASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC40Q4G0X9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
CCDC40Q4G0X9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC40Q4G0X9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.77■■□□□ 1.07
CCDC40Q4G0X9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms