Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.73■□□□□ 0.43
CLRN1P58418 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 TSPY6P-201ENST00000448518 926 ntBASIC17.73■□□□□ 0.43
CLRN1P58418 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN1P58418 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.73■□□□□ 0.43
CLRN1P58418 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN1P58418 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN1P58418 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.73■□□□□ 0.43
CLRN1P58418 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN1P58418 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.73■□□□□ 0.43
CLRN1P58418 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CLRN1P58418 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.72■□□□□ 0.43
CLRN1P58418 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 DUSP5P2-201ENST00000426873 1033 ntBASIC17.72■□□□□ 0.43
CLRN1P58418 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLRN1P58418 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN1P58418 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.71■□□□□ 0.43
CLRN1P58418 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CLRN1P58418 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN1P58418 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.71■□□□□ 0.43
CLRN1P58418 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN1P58418 MIR4758-201ENST00000577688 71 ntBASIC17.71■□□□□ 0.43
CLRN1P58418 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN1P58418 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.71■□□□□ 0.43
CLRN1P58418 AC092118.2-201ENST00000613495 667 ntBASIC17.71■□□□□ 0.43
CLRN1P58418 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.71■□□□□ 0.43
CLRN1P58418 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CLRN1P58418 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN1P58418 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.71■□□□□ 0.42
CLRN1P58418 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLRN1P58418 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLRN1P58418 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN1P58418 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN1P58418 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CLRN1P58418 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN1P58418 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN1P58418 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 TMEM179-206ENST00000616017 1645 ntBASIC17.7■□□□□ 0.42
CLRN1P58418 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN1P58418 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CLRN1P58418 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN1P58418 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.7■□□□□ 0.42
CLRN1P58418 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.7■□□□□ 0.42
CLRN1P58418 AC090192.1-201ENST00000517740 490 ntBASIC17.7■□□□□ 0.42
CLRN1P58418 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN1P58418 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.7■□□□□ 0.42
CLRN1P58418 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CLRN1P58418 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN1P58418 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CLRN1P58418 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN1P58418 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN1P58418 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLRN1P58418 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.69■□□□□ 0.42
CLRN1P58418 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLRN1P58418 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.69■□□□□ 0.42
CLRN1P58418 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.69■□□□□ 0.42
CLRN1P58418 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN1P58418 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms