Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH11P55287 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CDH11P55287 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 GUSBP6-202ENST00000438529 1198 ntBASIC18.12■□□□□ 0.49
CDH11P55287 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 KRT8P36-201ENST00000489121 1440 ntBASIC18.12■□□□□ 0.49
CDH11P55287 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH11P55287 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CDH11P55287 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CDH11P55287 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH11P55287 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH11P55287 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH11P55287 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.11■□□□□ 0.49
CDH11P55287 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.11■□□□□ 0.49
CDH11P55287 AC142086.2-201ENST00000569753 217 ntBASIC18.11■□□□□ 0.49
CDH11P55287 AC133552.2-202ENST00000575694 574 ntBASIC18.11■□□□□ 0.49
CDH11P55287 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH11P55287 AC008694.1-202ENST00000636953 945 ntBASIC18.11■□□□□ 0.49
CDH11P55287 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH11P55287 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CDH11P55287 BX119927.1-201ENST00000636596 1552 ntBASIC18.11■□□□□ 0.49
CDH11P55287 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH11P55287 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CDH11P55287 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.1■□□□□ 0.49
CDH11P55287 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.1■□□□□ 0.49
CDH11P55287 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.1■□□□□ 0.49
CDH11P55287 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.1■□□□□ 0.49
CDH11P55287 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.1■□□□□ 0.49
CDH11P55287 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CDH11P55287 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDH11P55287 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CDH11P55287 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.09■□□□□ 0.49
CDH11P55287 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.09■□□□□ 0.49
CDH11P55287 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.09■□□□□ 0.49
CDH11P55287 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.09■□□□□ 0.49
CDH11P55287 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
CDH11P55287 AC068338.2-201ENST00000563278 1430 ntBASIC18.09■□□□□ 0.49
CDH11P55287 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 AP000974.1-201ENST00000623909 2387 ntBASIC18.09■□□□□ 0.49
CDH11P55287 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.09■□□□□ 0.49
CDH11P55287 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDH11P55287 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CDH11P55287 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.09■□□□□ 0.49
CDH11P55287 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.09■□□□□ 0.49
CDH11P55287 AL138781.1-201ENST00000566567 1274 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms