Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.85■■□□□ 1.09
CLCN3P51790 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.85■■□□□ 1.09
CLCN3P51790 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 AL353807.1-201ENST00000427475 662 ntBASIC21.85■■□□□ 1.09
CLCN3P51790 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 BX088651.1-201ENST00000540551 451 ntBASIC21.85■■□□□ 1.09
CLCN3P51790 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.85■■□□□ 1.09
CLCN3P51790 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.85■■□□□ 1.09
CLCN3P51790 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
CLCN3P51790 AC026471.5-201ENST00000615068 467 ntBASIC21.85■■□□□ 1.09
CLCN3P51790 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.85■■□□□ 1.09
CLCN3P51790 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.85■■□□□ 1.09
CLCN3P51790 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCN3P51790 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CLCN3P51790 PHGDH-210ENST00000641115 1638 ntBASIC21.84■■□□□ 1.09
CLCN3P51790 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLCN3P51790 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLCN3P51790 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CLCN3P51790 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.84■■□□□ 1.09
CLCN3P51790 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.84■■□□□ 1.09
CLCN3P51790 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.84■■□□□ 1.09
CLCN3P51790 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.84■■□□□ 1.09
CLCN3P51790 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLCN3P51790 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLCN3P51790 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.83■■□□□ 1.09
CLCN3P51790 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.83■■□□□ 1.09
CLCN3P51790 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
CLCN3P51790 BX119927.1-201ENST00000636596 1552 ntBASIC21.83■■□□□ 1.09
CLCN3P51790 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.83■■□□□ 1.09
CLCN3P51790 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLCN3P51790 AP002982.1-201ENST00000492365 877 ntBASIC21.83■■□□□ 1.09
CLCN3P51790 AC073195.1-201ENST00000607241 877 ntBASIC21.83■■□□□ 1.09
CLCN3P51790 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
CLCN3P51790 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CLCN3P51790 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.83■■□□□ 1.08
CLCN3P51790 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.83■■□□□ 1.08
CLCN3P51790 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
CLCN3P51790 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CLCN3P51790 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLCN3P51790 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CLCN3P51790 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.82■■□□□ 1.08
CLCN3P51790 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CLCN3P51790 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CLCN3P51790 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.82■■□□□ 1.08
CLCN3P51790 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.82■■□□□ 1.08
CLCN3P51790 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.82■■□□□ 1.08
CLCN3P51790 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.82■■□□□ 1.08
CLCN3P51790 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.82■■□□□ 1.08
CLCN3P51790 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.82■■□□□ 1.08
CLCN3P51790 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.82■■□□□ 1.08
CLCN3P51790 REXO1L12P-201ENST00000622156 912 ntBASIC21.82■■□□□ 1.08
CLCN3P51790 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CLCN3P51790 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCN3P51790 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCN3P51790 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms