Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.64■□□□□ 0.41
LIMS4P0CW20 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.64■□□□□ 0.41
LIMS4P0CW20 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.64■□□□□ 0.41
LIMS4P0CW20 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMS4P0CW20 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS4P0CW20 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 LINC02228-203ENST00000641970 1355 ntBASIC17.63■□□□□ 0.41
LIMS4P0CW20 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS4P0CW20 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIMS4P0CW20 KRT8P17-201ENST00000453110 1448 ntBASIC17.63■□□□□ 0.41
LIMS4P0CW20 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS4P0CW20 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS4P0CW20 AP001271.2-201ENST00000624018 1556 ntBASIC17.62■□□□□ 0.41
LIMS4P0CW20 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS4P0CW20 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms