Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.64■□□□□ 0.41
LIMS3P0CW19 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.64■□□□□ 0.41
LIMS3P0CW19 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.64■□□□□ 0.41
LIMS3P0CW19 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMS3P0CW19 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 LINC02228-203ENST00000641970 1355 ntBASIC17.63■□□□□ 0.41
LIMS3P0CW19 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIMS3P0CW19 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIMS3P0CW19 KRT8P17-201ENST00000453110 1448 ntBASIC17.63■□□□□ 0.41
LIMS3P0CW19 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.62■□□□□ 0.41
LIMS3P0CW19 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIMS3P0CW19 AP001271.2-201ENST00000624018 1556 ntBASIC17.62■□□□□ 0.41
LIMS3P0CW19 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMS3P0CW19 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMS3P0CW19 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms