Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
COL3A1P02461 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL3A1P02461 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL3A1P02461 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC26.36■■□□□ 1.81
COL3A1P02461 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC26.36■■□□□ 1.81
COL3A1P02461 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.36■■□□□ 1.81
COL3A1P02461 GOLGA6L3-201ENST00000507199 1679 ntBASIC26.36■■□□□ 1.81
COL3A1P02461 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL3A1P02461 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC26.36■■□□□ 1.81
COL3A1P02461 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL3A1P02461 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
COL3A1P02461 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC26.36■■□□□ 1.81
COL3A1P02461 MIR4497-201ENST00000583208 89 ntBASIC26.36■■□□□ 1.81
COL3A1P02461 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.36■■□□□ 1.81
COL3A1P02461 AL391422.3-201ENST00000603791 2761 ntBASIC26.36■■□□□ 1.81
COL3A1P02461 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC26.35■■□□□ 1.81
COL3A1P02461 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
COL3A1P02461 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.35■■□□□ 1.81
COL3A1P02461 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 MIR718-201ENST00000390190 70 ntBASIC26.35■■□□□ 1.81
COL3A1P02461 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
COL3A1P02461 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC26.35■■□□□ 1.81
COL3A1P02461 AF186192.3-201ENST00000583427 947 ntBASIC26.35■■□□□ 1.81
COL3A1P02461 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.35■■□□□ 1.81
COL3A1P02461 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC26.35■■□□□ 1.81
COL3A1P02461 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC26.35■■□□□ 1.81
COL3A1P02461 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL3A1P02461 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 HTR7P1-201ENST00000538670 1336 ntBASIC26.34■■□□□ 1.81
COL3A1P02461 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 AP006587.1-201ENST00000534129 1502 ntBASIC26.34■■□□□ 1.81
COL3A1P02461 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
COL3A1P02461 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.34■■□□□ 1.81
COL3A1P02461 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
COL3A1P02461 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
COL3A1P02461 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC26.34■■□□□ 1.81
COL3A1P02461 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC26.34■■□□□ 1.81
COL3A1P02461 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
COL3A1P02461 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
COL3A1P02461 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
COL3A1P02461 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC26.34■■□□□ 1.81
COL3A1P02461 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC26.33■■□□□ 1.81
COL3A1P02461 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC26.33■■□□□ 1.81
COL3A1P02461 TSPY7P-201ENST00000431358 1114 ntBASIC26.33■■□□□ 1.81
COL3A1P02461 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL3A1P02461 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.33■■□□□ 1.81
COL3A1P02461 PENK-204ENST00000518770 863 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC26.33■■□□□ 1.81
COL3A1P02461 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC26.33■■□□□ 1.81
COL3A1P02461 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.8
COL3A1P02461 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC26.32■■□□□ 1.8
COL3A1P02461 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
COL3A1P02461 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 NIFKP9-201ENST00000419265 221 ntBASIC26.32■■□□□ 1.8
COL3A1P02461 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.32■■□□□ 1.8
COL3A1P02461 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC26.32■■□□□ 1.8
COL3A1P02461 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26.32■■□□□ 1.8
COL3A1P02461 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL3A1P02461 TMEM179-206ENST00000616017 1645 ntBASIC26.32■■□□□ 1.8
COL3A1P02461 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL3A1P02461 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL3A1P02461 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC26.31■■□□□ 1.8
COL3A1P02461 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms