Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.31■□□□□ 0.84
TOP3BO95985 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
TOP3BO95985 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.31■□□□□ 0.84
TOP3BO95985 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
TOP3BO95985 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.31■□□□□ 0.84
TOP3BO95985 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.31■□□□□ 0.84
TOP3BO95985 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.31■□□□□ 0.84
TOP3BO95985 AC008175.2-201ENST00000612840 297 ntBASIC20.31■□□□□ 0.84
TOP3BO95985 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
TOP3BO95985 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.31■□□□□ 0.84
TOP3BO95985 KRT17P1-201ENST00000399211 1546 ntBASIC20.31■□□□□ 0.84
TOP3BO95985 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.31■□□□□ 0.84
TOP3BO95985 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TOP3BO95985 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
TOP3BO95985 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.31■□□□□ 0.84
TOP3BO95985 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
TOP3BO95985 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.3■□□□□ 0.84
TOP3BO95985 RCN1P1-201ENST00000400413 996 ntBASIC20.3■□□□□ 0.84
TOP3BO95985 AL355472.2-201ENST00000422958 438 ntBASIC20.3■□□□□ 0.84
TOP3BO95985 TSPY7P-201ENST00000431358 1114 ntBASIC20.3■□□□□ 0.84
TOP3BO95985 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.3■□□□□ 0.84
TOP3BO95985 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.3■□□□□ 0.84
TOP3BO95985 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TOP3BO95985 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TOP3BO95985 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
TOP3BO95985 AL591742.1-201ENST00000604433 565 ntBASIC20.3■□□□□ 0.84
TOP3BO95985 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TOP3BO95985 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.3■□□□□ 0.84
TOP3BO95985 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TOP3BO95985 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TOP3BO95985 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.29■□□□□ 0.84
TOP3BO95985 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.29■□□□□ 0.84
TOP3BO95985 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 POU5F1P4-201ENST00000413175 1085 ntBASIC20.29■□□□□ 0.84
TOP3BO95985 TSPY15P-201ENST00000457163 923 ntBASIC20.29■□□□□ 0.84
TOP3BO95985 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.29■□□□□ 0.84
TOP3BO95985 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.29■□□□□ 0.84
TOP3BO95985 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.29■□□□□ 0.84
TOP3BO95985 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.29■□□□□ 0.84
TOP3BO95985 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TOP3BO95985 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.29■□□□□ 0.84
TOP3BO95985 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TOP3BO95985 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.29■□□□□ 0.84
TOP3BO95985 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TOP3BO95985 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.29■□□□□ 0.84
TOP3BO95985 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.28■□□□□ 0.84
TOP3BO95985 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.28■□□□□ 0.84
TOP3BO95985 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.28■□□□□ 0.84
TOP3BO95985 AC060766.5-201ENST00000590539 871 ntBASIC20.28■□□□□ 0.84
TOP3BO95985 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.28■□□□□ 0.84
TOP3BO95985 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TOP3BO95985 AC125437.2-201ENST00000625180 2167 ntBASIC20.28■□□□□ 0.84
TOP3BO95985 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TOP3BO95985 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TOP3BO95985 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TOP3BO95985 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TOP3BO95985 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TOP3BO95985 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TOP3BO95985 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TOP3BO95985 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TOP3BO95985 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.27■□□□□ 0.84
TOP3BO95985 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.27■□□□□ 0.84
TOP3BO95985 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.27■□□□□ 0.84
TOP3BO95985 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TOP3BO95985 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms