Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTN3O95197 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
RTN3O95197 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.91■□□□□ 0.94
RTN3O95197 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.91■□□□□ 0.94
RTN3O95197 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.91■□□□□ 0.94
RTN3O95197 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.91■□□□□ 0.94
RTN3O95197 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.91■□□□□ 0.94
RTN3O95197 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTN3O95197 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
RTN3O95197 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.9■□□□□ 0.94
RTN3O95197 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
RTN3O95197 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.9■□□□□ 0.94
RTN3O95197 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.9■□□□□ 0.94
RTN3O95197 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.9■□□□□ 0.94
RTN3O95197 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 MIR718-201ENST00000390190 70 ntBASIC20.9■□□□□ 0.94
RTN3O95197 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.9■□□□□ 0.94
RTN3O95197 RPS2P4-201ENST00000476944 856 ntBASIC20.9■□□□□ 0.94
RTN3O95197 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.9■□□□□ 0.94
RTN3O95197 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.9■□□□□ 0.94
RTN3O95197 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.9■□□□□ 0.94
RTN3O95197 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.9■□□□□ 0.94
RTN3O95197 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
RTN3O95197 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.9■□□□□ 0.94
RTN3O95197 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTN3O95197 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RTN3O95197 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTN3O95197 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTN3O95197 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.89■□□□□ 0.94
RTN3O95197 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RTN3O95197 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
RTN3O95197 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RTN3O95197 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTN3O95197 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.89■□□□□ 0.93
RTN3O95197 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RTN3O95197 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.89■□□□□ 0.93
RTN3O95197 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RTN3O95197 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RTN3O95197 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
RTN3O95197 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
RTN3O95197 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
RTN3O95197 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
RTN3O95197 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.88■□□□□ 0.93
RTN3O95197 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.88■□□□□ 0.93
RTN3O95197 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.88■□□□□ 0.93
RTN3O95197 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.88■□□□□ 0.93
RTN3O95197 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.88■□□□□ 0.93
RTN3O95197 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.88■□□□□ 0.93
RTN3O95197 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RTN3O95197 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RTN3O95197 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RTN3O95197 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.87■□□□□ 0.93
RTN3O95197 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.87■□□□□ 0.93
RTN3O95197 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.87■□□□□ 0.93
RTN3O95197 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTN3O95197 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTN3O95197 AC020907.5-201ENST00000624372 1936 ntBASIC20.87■□□□□ 0.93
RTN3O95197 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
RTN3O95197 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
RTN3O95197 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.87■□□□□ 0.93
RTN3O95197 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RTN3O95197 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.87■□□□□ 0.93
RTN3O95197 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.87■□□□□ 0.93
RTN3O95197 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms