Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.88■□□□□ 0.77
SHOX2O60902 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SHOX2O60902 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.88■□□□□ 0.77
SHOX2O60902 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHOX2O60902 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SHOX2O60902 SYT6-210ENST00000641643 1587 ntBASIC19.87■□□□□ 0.77
SHOX2O60902 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.87■□□□□ 0.77
SHOX2O60902 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.87■□□□□ 0.77
SHOX2O60902 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.87■□□□□ 0.77
SHOX2O60902 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.87■□□□□ 0.77
SHOX2O60902 RARRES2P11-201ENST00000635158 484 ntBASIC19.87■□□□□ 0.77
SHOX2O60902 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
SHOX2O60902 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHOX2O60902 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.86■□□□□ 0.77
SHOX2O60902 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SHOX2O60902 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SHOX2O60902 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SHOX2O60902 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.86■□□□□ 0.77
SHOX2O60902 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.86■□□□□ 0.77
SHOX2O60902 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.86■□□□□ 0.77
SHOX2O60902 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.86■□□□□ 0.77
SHOX2O60902 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.86■□□□□ 0.77
SHOX2O60902 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHOX2O60902 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
SHOX2O60902 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SHOX2O60902 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SHOX2O60902 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SHOX2O60902 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.85■□□□□ 0.77
SHOX2O60902 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.85■□□□□ 0.77
SHOX2O60902 Z98044.1-201ENST00000632503 1764 ntBASIC19.85■□□□□ 0.77
SHOX2O60902 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.85■□□□□ 0.77
SHOX2O60902 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHOX2O60902 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SHOX2O60902 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SHOX2O60902 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms