Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 BX842568.3-201ENST00000418104 571 ntBASIC14.49□□□□□ -0.09
SMKR1H3BMG3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 AC245052.3-201ENST00000450182 901 ntBASIC14.48□□□□□ -0.09
SMKR1H3BMG3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 IGHV3-19-201ENST00000521488 291 ntBASIC14.48□□□□□ -0.09
SMKR1H3BMG3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 MIR4466-201ENST00000606121 54 ntBASIC14.48□□□□□ -0.09
SMKR1H3BMG3 SF1-220ENST00000626028 704 ntTSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
SMKR1H3BMG3 HTR7P1-202ENST00000624664 4411 ntBASIC14.48□□□□□ -0.09
SMKR1H3BMG3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 AC116050.2-201ENST00000612102 1779 ntBASIC14.47□□□□□ -0.09
SMKR1H3BMG3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 LINC01465-201ENST00000408887 1940 ntBASIC14.47□□□□□ -0.09
SMKR1H3BMG3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 AC008175.2-201ENST00000612840 297 ntBASIC14.47□□□□□ -0.09
SMKR1H3BMG3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SMKR1H3BMG3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SMKR1H3BMG3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms