Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 LBX2-AS1-202ENST00000603175 2083 ntBASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 UBE2SP1-201ENST00000450587 669 ntBASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC26.73■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 OR10C1-204ENST00000622521 1039 ntBASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AL162412.1-201ENST00000567129 965 ntBASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 AC105020.6-201ENST00000621523 1217 ntBASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC26.71■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC26.7■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.7■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SENP3-EIF4A1A0A087X0R7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC26.69■■□□□ 1.86
SENP3-EIF4A1A0A087X0R7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.69■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms