Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
SCN4AP35499 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.65□□□□□ -1.18
SCN4AP35499 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
SCN4AP35499 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
SCN4AP35499 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 OFD1P17-201ENST00000437639 3018 ntBASIC7.65□□□□□ -1.19
SCN4AP35499 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
SCN4AP35499 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC7.65□□□□□ -1.19
SCN4AP35499 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC7.65□□□□□ -1.19
SCN4AP35499 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.19
SCN4AP35499 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.19
SCN4AP35499 OFD1P10Y-201ENST00000434110 1433 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC009166.2-201ENST00000624410 2833 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
SCN4AP35499 AL049697.3-201ENST00000406493 982 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.64□□□□□ -1.19
SCN4AP35499 RPS23P1-201ENST00000491662 432 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC091768.1-201ENST00000609258 930 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 AP000864.1-201ENST00000609424 650 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC007993.1-201ENST00000621298 2430 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 AL590004.4-201ENST00000566733 7060 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC7.64□□□□□ -1.19
SCN4AP35499 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
SCN4AP35499 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
SCN4AP35499 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 U3.7-201ENST00000363668 216 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC7.64□□□□□ -1.19
SCN4AP35499 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 NANOGP4-201ENST00000427230 913 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 SUMO2P3-201ENST00000438311 288 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC006499.3-201ENST00000506077 748 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 RNA5SP34-201ENST00000516887 130 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.64□□□□□ -1.19
SCN4AP35499 AC079600.1-201ENST00000550326 297 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC7.64□□□□□ -1.19
SCN4AP35499 MIR8089-201ENST00000620165 82 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 CASC19-222ENST00000641321 1173 ntBASIC7.64□□□□□ -1.19
SCN4AP35499 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
SCN4AP35499 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC7.63□□□□□ -1.19
SCN4AP35499 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC7.63□□□□□ -1.19
SCN4AP35499 AC008555.1-201ENST00000561778 2757 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 AL359922.2-201ENST00000581788 3017 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 LRRC37A6P-202ENST00000448648 5444 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.63□□□□□ -1.19
SCN4AP35499 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
SCN4AP35499 RPS3AP2-201ENST00000407190 754 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 Z68868.1-201ENST00000429048 544 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 AL353662.1-201ENST00000439099 327 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 AL163193.1-201ENST00000444895 788 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 RN7SL326P-201ENST00000477493 296 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 RPL32P9-201ENST00000487963 407 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 PABPC1P1-201ENST00000506347 591 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 AC096708.4-201ENST00000620563 552 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.63□□□□□ -1.19
SCN4AP35499 AC130448.2-201ENST00000624082 374 ntBASIC7.63□□□□□ -1.19
SCN4AP35499 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.63□□□□□ -1.19
SCN4AP35499 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.63□□□□□ -1.19
SCN4AP35499 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC7.63□□□□□ -1.19
SCN4AP35499 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SCN4AP35499 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
SCN4AP35499 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.62□□□□□ -1.19
SCN4AP35499 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
SCN4AP35499 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC7.62□□□□□ -1.19
SCN4AP35499 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SCN4AP35499 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SCN4AP35499 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SCN4AP35499 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SCN4AP35499 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms