Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 MTND4P13-201ENST00000402078 1023 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 RPL36P1-201ENST00000419720 225 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 OR7E36P-201ENST00000419933 954 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 GRPEL2P2-201ENST00000421856 670 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 RPL35P8-201ENST00000433284 337 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 PTENP1-201ENST00000447117 1215 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 MRPS21P1-201ENST00000453850 223 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC018475.1-201ENST00000478358 465 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 RN7SL182P-201ENST00000496499 300 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC106760.2-201ENST00000504159 619 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC105313.1-201ENST00000509121 353 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 CETN3-206ENST00000522864 738 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 OR5AM1P-201ENST00000532136 1032 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 FAM27E3-202ENST00000614611 340 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 STMN1P1-201ENST00000617809 440 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 BCL2L11-224ENST00000639340 243 ntTSL 5 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 OR8A1-204ENST00000642111 1145 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.07
TRAIPQ9BWF2 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ATP5BP1-201ENST00000411980 1574 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC012321.1-201ENST00000561622 1588 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 MRPS31-201ENST00000323563 1462 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 POLR1B-204ENST00000417433 3836 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 HNRNPA1P54-201ENST00000411857 9714 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 NF1-214ENST00000490416 1329 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 EEF1A1P21-201ENST00000512363 1344 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 Y_RNA.472-201ENST00000384322 102 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 RN7SKP261-201ENST00000410948 278 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 TCEA1P4-201ENST00000415066 844 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 FBP2P1-202ENST00000424473 530 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 FTH1P5-201ENST00000425761 545 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC022816.1-201ENST00000436469 804 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 ARAFP2-201ENST00000440565 559 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 CHIAP1-201ENST00000456220 995 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 RPL5P15-201ENST00000475870 897 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 OR7E22P-201ENST00000478335 1035 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC011037.1-201ENST00000483964 558 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 FAM177A1P1-201ENST00000503598 473 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC034244.1-201ENST00000507687 207 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC113352.1-201ENST00000513196 666 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 PRELID3BP4-201ENST00000515476 571 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 IGLVIV-59-201ENST00000520218 250 ntBASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 FLJ46284-202ENST00000521148 496 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC8.39□□□□□ -1.07
TRAIPQ9BWF2 HNRNPCP8-201ENST00000528764 888 ntBASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms