Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC100814.1-201ENST00000606963 623 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 AP005212.4-201ENST00000614206 710 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 MIR7854-201ENST00000620068 65 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.91□□□□□ -1.3
PTPN9P43378 RAB28P4-201ENST00000622233 665 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 AC005514.1-201ENST00000623521 208 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.91□□□□□ -1.3
PTPN9P43378 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.91□□□□□ -1.3
PTPN9P43378 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.91□□□□□ -1.3
PTPN9P43378 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.91□□□□□ -1.3
PTPN9P43378 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
PTPN9P43378 AC010132.4-201ENST00000569883 1368 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 AP000866.6-201ENST00000638898 3579 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.91□□□□□ -1.3
PTPN9P43378 RBPJP6-201ENST00000411556 1431 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
PTPN9P43378 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
PTPN9P43378 AC112243.1-201ENST00000623949 3851 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 API5P1-201ENST00000424316 1510 ntBASIC6.91□□□□□ -1.3
PTPN9P43378 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
PTPN9P43378 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 AC062022.1-201ENST00000451026 1684 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 AL359195.2-201ENST00000623657 4412 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 AC087392.3-202ENST00000358446 1754 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 AC010894.1-201ENST00000313760 361 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 RNU1-5P-201ENST00000362684 144 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
PTPN9P43378 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 SNORA81-201ENST00000408493 178 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC083855.1-201ENST00000440041 258 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 TVP23CP1-201ENST00000450317 639 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 OR7L1P-201ENST00000456181 380 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 NATP-201ENST00000523491 878 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 AP004607.6-201ENST00000525033 1202 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 OR52K3P-201ENST00000531655 943 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.9□□□□□ -1.3
PTPN9P43378 RPL7AP69-201ENST00000595306 806 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.9□□□□□ -1.3
PTPN9P43378 BUB1P1-201ENST00000603541 607 ntBASIC6.9□□□□□ -1.3
PTPN9P43378 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.9□□□□□ -1.3
PTPN9P43378 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.9□□□□□ -1.3
PTPN9P43378 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
PTPN9P43378 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
PTPN9P43378 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
PTPN9P43378 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
PTPN9P43378 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
PTPN9P43378 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.9□□□□□ -1.31
PTPN9P43378 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.9□□□□□ -1.31
PTPN9P43378 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
PTPN9P43378 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
PTPN9P43378 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.9□□□□□ -1.31
PTPN9P43378 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.9□□□□□ -1.31
PTPN9P43378 AC009135.2-201ENST00000624136 1768 ntBASIC6.9□□□□□ -1.31
PTPN9P43378 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
PTPN9P43378 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
PTPN9P43378 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
PTPN9P43378 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms