Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNA5SP176-201ENST00000390956 110 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 RPL31-202ENST00000409000 641 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 GAPDHP57-201ENST00000424400 585 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AL139415.1-201ENST00000424862 352 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 E2F6P1-201ENST00000428850 745 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC114402.2-201ENST00000432760 643 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 CHCHD4P5-201ENST00000436684 427 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC128716.1-201ENST00000475129 166 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 H3F3AP3-201ENST00000497682 407 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 RNA5SP278-201ENST00000517055 102 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC073581.1-201ENST00000519036 575 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 IGLV3-6-201ENST00000523937 250 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC044839.3-201ENST00000532068 860 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC069240.2-201ENST00000550242 609 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 HMGN1P26-201ENST00000558737 303 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 CNTNAP3P1-201ENST00000616657 906 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AC140479.4-205ENST00000636339 820 ntBASIC5.05□□□□□ -1.6
HLA-DMBP28068 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HLA-DMBP28068 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HLA-DMBP28068 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 ZNF806-201ENST00000438300 1774 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 SAMMSON-210ENST00000641260 1308 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AL359263.1-201ENST00000441188 2796 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 OR10D1P-201ENST00000355343 936 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AL663061.1-201ENST00000416625 580 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 PFN1P11-201ENST00000445829 389 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 RN7SL654P-201ENST00000479178 292 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 RPL23AP68-201ENST00000480924 445 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC022415.1-202ENST00000486612 523 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 IGKV2D-38-201ENST00000518423 240 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC021820.1-201ENST00000525564 808 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AL132640.1-201ENST00000559594 619 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC010287.1-201ENST00000566916 357 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC068408.1-201ENST00000577406 1144 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 RPS27AP19-201ENST00000597285 458 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC011497.2-201ENST00000600255 639 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 AL590032.1-201ENST00000604920 252 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 PDE4DIP-241ENST00000616206 874 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC063952.1-203ENST00000634410 658 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 MKI67P1-201ENST00000604297 1460 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 CASC19-228ENST00000641414 1684 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LRRC37A12P-201ENST00000454917 1801 ntBASIC5.04□□□□□ -1.6
HLA-DMBP28068 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HLA-DMBP28068 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms