Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC10.67□□□□□ -0.7
CUX1P39880 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC10.67□□□□□ -0.7
CUX1P39880 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC10.67□□□□□ -0.7
CUX1P39880 RN7SL705P-201ENST00000481678 294 ntBASIC10.67□□□□□ -0.7
CUX1P39880 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC10.67□□□□□ -0.7
CUX1P39880 MTND6P16-201ENST00000504006 520 ntBASIC10.67□□□□□ -0.7
CUX1P39880 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC10.67□□□□□ -0.7
CUX1P39880 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC10.67□□□□□ -0.7
CUX1P39880 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC10.67□□□□□ -0.7
CUX1P39880 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC10.67□□□□□ -0.7
CUX1P39880 AC090616.1-201ENST00000583895 447 ntBASIC10.67□□□□□ -0.7
CUX1P39880 RPL12P48-201ENST00000605620 304 ntBASIC10.67□□□□□ -0.7
CUX1P39880 MIR6719-201ENST00000622428 87 ntBASIC10.67□□□□□ -0.7
CUX1P39880 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
CUX1P39880 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC10.67□□□□□ -0.7
CUX1P39880 COG2-209ENST00000534989 2963 ntTSL 2 BASIC10.67□□□□□ -0.7
CUX1P39880 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC10.67□□□□□ -0.7
CUX1P39880 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC10.67□□□□□ -0.7
CUX1P39880 MAGEB16-205ENST00000399992 1734 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
CUX1P39880 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 CNPY1-201ENST00000321736 2378 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CUX1P39880 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CUX1P39880 U3.43-201ENST00000410734 213 ntBASIC10.66□□□□□ -0.7
CUX1P39880 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC10.66□□□□□ -0.7
CUX1P39880 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC10.66□□□□□ -0.7
CUX1P39880 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC10.66□□□□□ -0.7
CUX1P39880 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC10.66□□□□□ -0.7
CUX1P39880 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 MIR4489-201ENST00000578869 62 ntBASIC10.66□□□□□ -0.7
CUX1P39880 AL953862.2-201ENST00000603089 820 ntBASIC10.66□□□□□ -0.7
CUX1P39880 AC005393.1-201ENST00000617916 584 ntBASIC10.66□□□□□ -0.7
CUX1P39880 CGA-206ENST00000630630 832 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 AC104964.2-201ENST00000562242 4641 ntBASIC10.66□□□□□ -0.7
CUX1P39880 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC10.66□□□□□ -0.7
CUX1P39880 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CUX1P39880 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC10.66□□□□□ -0.7
CUX1P39880 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC10.65□□□□□ -0.7
CUX1P39880 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.7
CUX1P39880 AF287957.1-201ENST00000607368 1595 ntBASIC10.65□□□□□ -0.7
CUX1P39880 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
CUX1P39880 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 RNU1-49P-201ENST00000363468 159 ntBASIC10.65□□□□□ -0.7
CUX1P39880 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 RNU1-46P-201ENST00000384425 164 ntBASIC10.65□□□□□ -0.7
CUX1P39880 AL355355.1-201ENST00000442900 793 ntBASIC10.65□□□□□ -0.7
CUX1P39880 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC10.65□□□□□ -0.7
CUX1P39880 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC10.65□□□□□ -0.7
CUX1P39880 AC022206.1-201ENST00000495947 347 ntBASIC10.65□□□□□ -0.7
CUX1P39880 RPL5P11-201ENST00000498068 893 ntBASIC10.65□□□□□ -0.7
CUX1P39880 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC10.65□□□□□ -0.7
CUX1P39880 STARD6-202ENST00000577499 696 ntTSL 2 BASIC10.65□□□□□ -0.7
CUX1P39880 MIR7159-201ENST00000620587 66 ntBASIC10.65□□□□□ -0.7
CUX1P39880 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC10.65□□□□□ -0.7
CUX1P39880 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 TATDN2P3-201ENST00000452855 3665 ntBASIC10.65□□□□□ -0.7
CUX1P39880 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
CUX1P39880 CUBNP3-201ENST00000457461 1784 ntBASIC10.65□□□□□ -0.7
CUX1P39880 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CUX1P39880 AC015689.2-201ENST00000528172 1738 ntBASIC10.65□□□□□ -0.7
CUX1P39880 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC10.65□□□□□ -0.71
CUX1P39880 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC10.65□□□□□ -0.71
CUX1P39880 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
CUX1P39880 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 MIR323A-201ENST00000362199 86 ntBASIC10.64□□□□□ -0.71
CUX1P39880 AL391361.1-201ENST00000405580 489 ntBASIC10.64□□□□□ -0.71
CUX1P39880 AL023284.3-201ENST00000407767 334 ntBASIC10.64□□□□□ -0.71
CUX1P39880 Z93019.1-201ENST00000416450 973 ntBASIC10.64□□□□□ -0.71
CUX1P39880 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC10.64□□□□□ -0.71
CUX1P39880 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC10.64□□□□□ -0.71
CUX1P39880 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC10.64□□□□□ -0.71
CUX1P39880 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 AC106800.2-201ENST00000514009 1103 ntBASIC10.64□□□□□ -0.71
CUX1P39880 IGKV2-19-201ENST00000518132 283 ntBASIC10.64□□□□□ -0.71
CUX1P39880 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC10.64□□□□□ -0.71
CUX1P39880 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 AC004477.3-201ENST00000614061 590 ntBASIC10.64□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms