Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SYNE1Q8NF91 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC2.05□□□□□ -2.08
SYNE1Q8NF91 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC2.05□□□□□ -2.08
SYNE1Q8NF91 AL451064.2-201ENST00000623514 1654 ntBASIC2.05□□□□□ -2.08
SYNE1Q8NF91 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPLP1P10-201ENST00000413972 339 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL035422.1-201ENST00000414193 397 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC094085.1-201ENST00000468914 584 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC083906.1-201ENST00000509298 406 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC073046.2-201ENST00000604756 527 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 NEK2P2-201ENST00000438441 1338 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 FABP5P1-201ENST00000423401 411 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 VN1R53P-201ENST00000429536 957 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC093166.3-201ENST00000448785 303 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PFN2-217ENST00000498307 556 ntTSL 4 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC078955.1-201ENST00000547123 882 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL121583.1-201ENST00000612444 682 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC007066.2-201ENST00000561961 1993 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 STAMBP-203ENST00000394073 6386 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CDY7P-201ENST00000429883 1604 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SEPHS1P4-201ENST00000446112 1176 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 GLRXP3-201ENST00000470810 321 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC005618.1-201ENST00000606901 3148 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 UPF2-202ENST00000357604 5193 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AMYP1-201ENST00000440059 1023 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 Vault.2-201ENST00000516519 98 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 IGLVIV-64-201ENST00000518581 301 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC098590.2-201ENST00000614787 281 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms