Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Z99129.2-201ENST00000619967 314 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.13□□□□□ -1.27
USP39Q53GS9 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 RNA5SP382-201ENST00000363355 112 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 RN7SKP250-201ENST00000363924 321 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.12□□□□□ -1.27
USP39Q53GS9 RPS3AP25-201ENST00000411660 793 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC007365.2-201ENST00000428806 458 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 NPM1P23-201ENST00000440193 849 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 E2F6P3-201ENST00000441743 743 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 OR13C1P-201ENST00000457612 963 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AK5-208ENST00000478255 556 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.12□□□□□ -1.27
USP39Q53GS9 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC116917.1-201ENST00000520558 305 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7.12□□□□□ -1.27
USP39Q53GS9 GLYATL1P4-201ENST00000529326 906 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC7.12□□□□□ -1.27
USP39Q53GS9 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 MIR4271-201ENST00000582451 67 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.12□□□□□ -1.27
USP39Q53GS9 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC112220.2-201ENST00000605513 533 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 AL035425.4-201ENST00000624509 1063 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 CASC19-212ENST00000641153 1287 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
USP39Q53GS9 OR4C1P-202ENST00000641065 1569 ntBASIC7.12□□□□□ -1.27
USP39Q53GS9 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.12□□□□□ -1.27
USP39Q53GS9 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
USP39Q53GS9 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
USP39Q53GS9 PPBPP2-201ENST00000513150 1362 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
USP39Q53GS9 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
USP39Q53GS9 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 RNU6-1055P-201ENST00000391085 107 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 OR13Z1P-201ENST00000416141 834 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 SPATA20P1-201ENST00000423089 438 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AHCYP8-201ENST00000425108 209 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC7.11□□□□□ -1.27
USP39Q53GS9 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 MYL6P3-201ENST00000436904 432 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 RBMY2AP-201ENST00000445405 1157 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 RBMY2CP-201ENST00000448575 1157 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 RBMY2DP-202ENST00000448881 1157 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AL354714.5-201ENST00000450131 590 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms