Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC8.03□□□□□ -1.12
COL5A3P25940 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
COL5A3P25940 SNORA21-201ENST00000362423 132 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AL023284.3-201ENST00000407767 334 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 RNA5SP178-201ENST00000410380 128 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 FTH1P20-201ENST00000434913 548 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC023245.2-201ENST00000530760 2978 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL5A3P25940 STARD6-202ENST00000577499 696 ntTSL 2 BASIC8.03□□□□□ -1.12
COL5A3P25940 AC090616.1-201ENST00000583895 447 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 OXSM-209ENST00000626005 309 ntTSL 3 BASIC8.03□□□□□ -1.12
COL5A3P25940 AC009948.5-201ENST00000624360 4406 ntBASIC8.03□□□□□ -1.12
COL5A3P25940 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 MAGEB16-205ENST00000399992 1734 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL5A3P25940 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC8.02□□□□□ -1.12
COL5A3P25940 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.12
COL5A3P25940 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC8.02□□□□□ -1.12
COL5A3P25940 AC007485.2-201ENST00000623493 1667 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
COL5A3P25940 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
COL5A3P25940 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 MYOM1-203ENST00000400569 4927 ntTSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 AL713922.1-201ENST00000416477 747 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 AC245047.1-201ENST00000433276 873 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 HNRNPA1P18-201ENST00000433537 927 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 CLUHP1-201ENST00000435012 1190 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
COL5A3P25940 KRTAP8-2P-201ENST00000440620 186 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC8.02□□□□□ -1.13
COL5A3P25940 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC8.02□□□□□ -1.13
COL5A3P25940 AL121579.2-201ENST00000555466 590 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 AC051619.2-201ENST00000559063 397 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC8.02□□□□□ -1.13
COL5A3P25940 WDR31-202ENST00000374193 4878 ntAPPRIS ALT1 TSL 1 (best) BASIC8.02□□□□□ -1.13
COL5A3P25940 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
COL5A3P25940 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC8.02□□□□□ -1.13
COL5A3P25940 TNIK-201ENST00000284483 4059 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
COL5A3P25940 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
COL5A3P25940 AC087501.5-201ENST00000607496 2374 ntBASIC8.02□□□□□ -1.13
COL5A3P25940 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 AL139384.2-201ENST00000613809 3590 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 AC245060.6-201ENST00000624350 8420 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC016908.1-201ENST00000442571 1219 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.01□□□□□ -1.13
COL5A3P25940 GEMIN2P1-201ENST00000454246 752 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC8.01□□□□□ -1.13
COL5A3P25940 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 AC096708.4-201ENST00000620563 552 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 AC007993.1-201ENST00000621298 2430 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 SETD7-207ENST00000608958 5281 ntTSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 NEK2P4-201ENST00000425793 1329 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 AL512310.3-201ENST00000547023 1335 ntBASIC8.01□□□□□ -1.13
COL5A3P25940 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 DNAH11-201ENST00000328843 13917 ntAPPRIS ALT2 TSL 5 BASIC8.01□□□□□ -1.13
COL5A3P25940 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC8.01□□□□□ -1.13
COL5A3P25940 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
COL5A3P25940 MIR323A-201ENST00000362199 86 ntBASIC8□□□□□ -1.13
COL5A3P25940 RN7SKP278-201ENST00000410504 342 ntBASIC8□□□□□ -1.13
COL5A3P25940 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC8□□□□□ -1.13
COL5A3P25940 SUMO2P3-201ENST00000438311 288 ntBASIC8□□□□□ -1.13
COL5A3P25940 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC8□□□□□ -1.13
COL5A3P25940 SUMO2P10-201ENST00000452006 288 ntBASIC8□□□□□ -1.13
COL5A3P25940 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC8□□□□□ -1.13
COL5A3P25940 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC8□□□□□ -1.13
COL5A3P25940 DCN-209ENST00000546745 1026 ntTSL 3 BASIC8□□□□□ -1.13
COL5A3P25940 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC8□□□□□ -1.13
COL5A3P25940 AL008723.3-201ENST00000608926 449 ntBASIC8□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms