Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC7.74□□□□□ -1.17
MSX1P28360 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSX1P28360 AC096745.2-201ENST00000627783 1914 ntBASIC7.74□□□□□ -1.17
MSX1P28360 AC092656.1-201ENST00000503243 2097 ntTSL 2 BASIC7.74□□□□□ -1.17
MSX1P28360 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 FBXL17-206ENST00000619412 4059 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 LINC00558-201ENST00000569422 3163 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 NUDT13-201ENST00000349051 1835 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC100756.3-201ENST00000618455 1816 ntBASIC7.73□□□□□ -1.17
MSX1P28360 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TRIM43-201ENST00000272395 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TOM1L1-203ENST00000536554 1522 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 NEPNP-201ENST00000404786 1371 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AP000705.2-201ENST00000433524 1386 ntBASIC7.73□□□□□ -1.17
MSX1P28360 DDIAS-211ENST00000533655 3533 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 ZNF200-201ENST00000396868 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 VIT-203ENST00000389975 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC068733.1-202ENST00000531479 2456 ntBASIC7.73□□□□□ -1.17
MSX1P28360 PSG9-209ENST00000621109 2019 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 AL135818.1-202ENST00000554096 1740 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 CPEB4-209ENST00000522336 1551 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 MAGEC1-201ENST00000285879 4270 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC125238.2-201ENST00000430003 1440 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC104078.1-201ENST00000499292 1448 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 FABP1-201ENST00000295834 555 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TGIF2LY-201ENST00000321217 905 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 OR1J2-201ENST00000335302 942 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
MSX1P28360 MIR548XHG-201ENST00000355189 673 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 MIR425-201ENST00000362162 87 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC073621.2-201ENST00000381380 1024 ntBASIC7.73□□□□□ -1.17
MSX1P28360 TRBV6-1-201ENST00000390353 401 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
MSX1P28360 RPL23AP59-201ENST00000399415 461 ntBASIC7.73□□□□□ -1.17
MSX1P28360 RN7SKP181-201ENST00000411188 316 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TAF13P2-201ENST00000416876 286 ntBASIC7.73□□□□□ -1.17
MSX1P28360 RPL3P4-201ENST00000417615 423 ntBASIC7.73□□□□□ -1.17
MSX1P28360 MTCYBP24-201ENST00000420387 1106 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL807761.3-201ENST00000427833 329 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 RPSAP53-201ENST00000433498 862 ntBASIC7.73□□□□□ -1.17
MSX1P28360 CFL1P8-201ENST00000436148 475 ntBASIC7.73□□□□□ -1.17
MSX1P28360 LINC01422-202ENST00000438113 517 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 AC096632.2-201ENST00000438139 1239 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 ANKRD30BP3-201ENST00000444850 1070 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 PSMA2-204ENST00000445517 683 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 SFTPA3P-201ENST00000446429 367 ntBASIC7.73□□□□□ -1.17
MSX1P28360 MTND4P19-201ENST00000446659 478 ntBASIC7.73□□□□□ -1.17
MSX1P28360 FTH1P27-201ENST00000449509 551 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 MARK2P8-201ENST00000476069 952 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC072039.1-201ENST00000477611 581 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL079303.1-201ENST00000486611 463 ntBASIC7.73□□□□□ -1.17
MSX1P28360 TMEM196-205ENST00000493519 687 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 AC006499.5-201ENST00000505037 514 ntBASIC7.73□□□□□ -1.17
MSX1P28360 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 GNGT2-205ENST00000511673 500 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 SNRPCP14-201ENST00000524498 205 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC099687.1-201ENST00000531798 510 ntTSL 3 BASIC7.73□□□□□ -1.17
MSX1P28360 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 AC007751.2-201ENST00000534173 291 ntBASIC7.73□□□□□ -1.17
MSX1P28360 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
MSX1P28360 TMEM132D-AS1-206ENST00000541320 440 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC078955.1-201ENST00000547123 882 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 AC124947.2-202ENST00000552735 133 ntBASIC7.73□□□□□ -1.17
MSX1P28360 CFL2-206ENST00000556161 546 ntTSL 4 BASIC7.73□□□□□ -1.17
MSX1P28360 CYP2C60P-201ENST00000566088 139 ntBASIC7.73□□□□□ -1.17
MSX1P28360 RN7SL664P-201ENST00000584239 305 ntBASIC7.73□□□□□ -1.17
MSX1P28360 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 MIR6505-201ENST00000617206 71 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AL669830.1-201ENST00000621457 656 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AQP4-208ENST00000622234 891 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC012414.7-202ENST00000622705 1090 ntBASIC7.73□□□□□ -1.17
MSX1P28360 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC7.73□□□□□ -1.17
MSX1P28360 SHQ1-203ENST00000463369 2065 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 GTF2H2-201ENST00000274400 4336 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 DTNA-233ENST00000601125 1931 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC7.73□□□□□ -1.17
MSX1P28360 UACA-203ENST00000539319 4026 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 BMS1P1-201ENST00000374336 1332 ntBASIC7.73□□□□□ -1.17
MSX1P28360 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 LINC02436-202ENST00000509017 2186 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSX1P28360 AC044810.2-202ENST00000527847 2503 ntTSL 2 BASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms