Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
USP39Q53GS9 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 PPIAP22-201ENST00000358455 498 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 RN7SKP191-201ENST00000364713 306 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 CNTRL-202ENST00000373844 713 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USP39Q53GS9 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 VN1R12P-201ENST00000403778 876 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AL353133.1-201ENST00000407695 401 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 UBE2V1P6-201ENST00000430840 422 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AC008628.1-201ENST00000508663 265 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 AP001636.2-201ENST00000525517 696 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC7.15□□□□□ -1.26
USP39Q53GS9 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC7.15□□□□□ -1.26
USP39Q53GS9 AL451086.1-201ENST00000605596 223 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 MIR7109-201ENST00000613748 65 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 AC006386.1-201ENST00000619436 415 ntBASIC7.15□□□□□ -1.26
USP39Q53GS9 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.15□□□□□ -1.26
USP39Q53GS9 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.15□□□□□ -1.27
USP39Q53GS9 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USP39Q53GS9 AL356361.1-201ENST00000400943 1459 ntBASIC7.15□□□□□ -1.27
USP39Q53GS9 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.27
USP39Q53GS9 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USP39Q53GS9 BX322650.1-201ENST00000332359 2143 ntBASIC7.15□□□□□ -1.27
USP39Q53GS9 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
USP39Q53GS9 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
USP39Q53GS9 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 CXADRP1-201ENST00000398098 1095 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 RPL24P7-201ENST00000399435 453 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AL079341.1-201ENST00000404701 1207 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.14□□□□□ -1.27
USP39Q53GS9 ALDH7A1P4-201ENST00000412255 178 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AL354794.2-201ENST00000424795 1248 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC095038.1-201ENST00000429248 1591 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC002486.2-201ENST00000447806 590 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 RPL5P23-201ENST00000496040 868 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 ZNF969P-201ENST00000510345 2341 ntBASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms