Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 CASC19-238ENST00000641523 1558 ntBASIC10.8□□□□□ -0.68
CUX1P39880 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CUX1P39880 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CUX1P39880 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 OR52B3P-201ENST00000314715 928 ntBASIC10.79□□□□□ -0.68
CUX1P39880 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 AL354890.1-201ENST00000413730 346 ntBASIC10.79□□□□□ -0.68
CUX1P39880 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC10.79□□□□□ -0.68
CUX1P39880 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC10.79□□□□□ -0.68
CUX1P39880 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC10.79□□□□□ -0.68
CUX1P39880 AC011476.1-201ENST00000466725 307 ntBASIC10.79□□□□□ -0.68
CUX1P39880 NPM1P45-201ENST00000583151 559 ntBASIC10.79□□□□□ -0.68
CUX1P39880 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 AC126175.1-201ENST00000617041 758 ntBASIC10.79□□□□□ -0.68
CUX1P39880 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC10.79□□□□□ -0.68
CUX1P39880 AC073065.1-201ENST00000411678 2866 ntBASIC10.79□□□□□ -0.68
CUX1P39880 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CUX1P39880 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC10.79□□□□□ -0.68
CUX1P39880 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC10.79□□□□□ -0.68
CUX1P39880 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 KRT73-AS1-203ENST00000552364 3808 ntTSL 2 BASIC10.79□□□□□ -0.68
CUX1P39880 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
CUX1P39880 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 AC015871.3-201ENST00000618835 2261 ntBASIC10.79□□□□□ -0.68
CUX1P39880 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CUX1P39880 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC10.79□□□□□ -0.68
CUX1P39880 AL157884.1-201ENST00000424561 454 ntBASIC10.79□□□□□ -0.68
CUX1P39880 ATP5LP2-201ENST00000440646 311 ntBASIC10.79□□□□□ -0.68
CUX1P39880 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC10.79□□□□□ -0.68
CUX1P39880 AC002456.2-201ENST00000509356 380 ntBASIC10.79□□□□□ -0.68
CUX1P39880 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC10.79□□□□□ -0.68
CUX1P39880 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC10.79□□□□□ -0.68
CUX1P39880 AL513218.1-201ENST00000606527 391 ntBASIC10.79□□□□□ -0.68
CUX1P39880 TRIM60-204ENST00000512596 1888 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
CUX1P39880 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC10.78□□□□□ -0.68
CUX1P39880 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC10.78□□□□□ -0.68
CUX1P39880 AL035530.2-201ENST00000607391 1675 ntTSL 3 BASIC10.78□□□□□ -0.68
CUX1P39880 EIF3EP1-201ENST00000433978 1316 ntBASIC10.78□□□□□ -0.68
CUX1P39880 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC10.78□□□□□ -0.68
CUX1P39880 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
CUX1P39880 Z97832.2-201ENST00000605896 4261 ntBASIC10.78□□□□□ -0.68
CUX1P39880 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC10.78□□□□□ -0.68
CUX1P39880 TMSB4XP2-201ENST00000335179 210 ntBASIC10.78□□□□□ -0.68
CUX1P39880 SNORD16-201ENST00000362803 99 ntBASIC10.78□□□□□ -0.68
CUX1P39880 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC10.78□□□□□ -0.68
CUX1P39880 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC10.78□□□□□ -0.68
CUX1P39880 OR3D1P-201ENST00000438288 955 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC10.78□□□□□ -0.68
CUX1P39880 RPL31P15-201ENST00000449770 338 ntBASIC10.78□□□□□ -0.68
CUX1P39880 HIGD1AP16-201ENST00000450986 258 ntBASIC10.78□□□□□ -0.68
CUX1P39880 OR2A1-AS1-202ENST00000467944 422 ntBASIC10.78□□□□□ -0.68
CUX1P39880 RPL34P33-201ENST00000486062 334 ntBASIC10.78□□□□□ -0.68
CUX1P39880 RNA5SP438-201ENST00000516561 112 ntBASIC10.78□□□□□ -0.68
CUX1P39880 RNA5SP271-201ENST00000516700 88 ntBASIC10.78□□□□□ -0.68
CUX1P39880 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC10.78□□□□□ -0.68
CUX1P39880 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
CUX1P39880 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
CUX1P39880 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC10.78□□□□□ -0.68
CUX1P39880 AP001858.2-201ENST00000536213 601 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC10.78□□□□□ -0.68
CUX1P39880 AP001823.1-201ENST00000604056 1003 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AC108673.3-201ENST00000609183 335 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AL357153.4-201ENST00000620487 1016 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AC129778.1-202ENST00000623812 261 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AL591379.1-207ENST00000635982 261 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AMYH02020865.1-205ENST00000636189 261 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC10.78□□□□□ -0.68
CUX1P39880 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
CUX1P39880 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
CUX1P39880 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
CUX1P39880 DYNC1I2P1-201ENST00000435916 1838 ntBASIC10.78□□□□□ -0.68
CUX1P39880 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC10.78□□□□□ -0.68
CUX1P39880 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CUX1P39880 CYP2G2P-201ENST00000594920 1485 ntBASIC10.78□□□□□ -0.68
CUX1P39880 AC023818.2-201ENST00000623817 2304 ntBASIC10.77□□□□□ -0.68
CUX1P39880 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CUX1P39880 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
CUX1P39880 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CUX1P39880 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CUX1P39880 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CUX1P39880 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms