Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL596275.2-208ENST00000641192 594 ntBASIC6.73□□□□□ -1.33
MSX2P35548 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX2P35548 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 FAM49A-201ENST00000381323 4670 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX2P35548 AC005618.1-201ENST00000606901 3148 ntBASIC6.73□□□□□ -1.33
MSX2P35548 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX2P35548 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX2P35548 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX2P35548 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 ITM2A-202ENST00000434584 1698 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 AL451064.2-201ENST00000623514 1654 ntBASIC6.72□□□□□ -1.33
MSX2P35548 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 RNA5SP512-201ENST00000364550 120 ntBASIC6.72□□□□□ -1.33
MSX2P35548 PTMAP8-201ENST00000397729 342 ntBASIC6.72□□□□□ -1.33
MSX2P35548 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 RANP5-201ENST00000427731 655 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AL512637.2-201ENST00000431287 1256 ntBASIC6.72□□□□□ -1.33
MSX2P35548 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 SUMO2P8-201ENST00000434672 286 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AL606490.8-201ENST00000441624 319 ntBASIC6.72□□□□□ -1.33
MSX2P35548 TTC21B-AS1-202ENST00000443032 544 ntTSL 4 BASIC6.72□□□□□ -1.33
MSX2P35548 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 OR7E102P-201ENST00000448855 1015 ntBASIC6.72□□□□□ -1.33
MSX2P35548 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 RN7SL395P-201ENST00000462960 291 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AC114300.1-201ENST00000502347 280 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC6.72□□□□□ -1.33
MSX2P35548 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.72□□□□□ -1.33
MSX2P35548 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 OR8G5-201ENST00000524943 1041 ntBASIC6.72□□□□□ -1.33
MSX2P35548 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 AP003555.2-201ENST00000528507 655 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 UBTFL10-201ENST00000528532 562 ntBASIC6.72□□□□□ -1.33
MSX2P35548 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.72□□□□□ -1.33
MSX2P35548 PFDN5-211ENST00000550846 392 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 DPPA3P2-201ENST00000553589 478 ntBASIC6.72□□□□□ -1.33
MSX2P35548 CDH13-207ENST00000565636 810 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 NPM1P45-201ENST00000583151 559 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AC105243.1-202ENST00000583942 847 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX2P35548 AC091057.2-201ENST00000602594 792 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AC080013.6-201ENST00000606185 215 ntBASIC6.72□□□□□ -1.33
MSX2P35548 CUX2P1-201ENST00000606426 298 ntBASIC6.72□□□□□ -1.33
MSX2P35548 RN7SL3-201ENST00000610674 299 ntBASIC6.72□□□□□ -1.33
MSX2P35548 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 AC079395.3-201ENST00000615161 484 ntBASIC6.72□□□□□ -1.33
MSX2P35548 AC005383.1-201ENST00000622689 534 ntBASIC6.72□□□□□ -1.33
MSX2P35548 METAP1-212ENST00000625963 147 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 AL590396.3-201ENST00000636334 300 ntBASIC6.72□□□□□ -1.33
MSX2P35548 ZNF85-202ENST00000328178 2296 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
MSX2P35548 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
MSX2P35548 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX2P35548 CR788268.1-201ENST00000603931 1809 ntBASIC6.71□□□□□ -1.33
MSX2P35548 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.71□□□□□ -1.33
MSX2P35548 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.71□□□□□ -1.33
MSX2P35548 AL357556.1-201ENST00000421884 1388 ntBASIC6.71□□□□□ -1.33
MSX2P35548 AC005261.6-201ENST00000623072 1387 ntBASIC6.71□□□□□ -1.33
MSX2P35548 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSX2P35548 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
MSX2P35548 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.33
MSX2P35548 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX2P35548 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX2P35548 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX2P35548 OR52B5P-204ENST00000641744 3467 ntBASIC6.71□□□□□ -1.34
MSX2P35548 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms