Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 UBE2FP2-201ENST00000566646 462 ntBASIC7.77□□□□□ -1.17
MSX1P28360 MIR5708-201ENST00000579723 85 ntBASIC7.77□□□□□ -1.17
MSX1P28360 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 GMFG-204ENST00000595636 487 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 PROX1-AS1-208ENST00000601335 691 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 ZNF473-209ENST00000601364 603 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC7.77□□□□□ -1.17
MSX1P28360 AL390816.3-201ENST00000604527 1066 ntBASIC7.77□□□□□ -1.17
MSX1P28360 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 AC023983.2-201ENST00000608010 562 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC104458.1-201ENST00000608243 463 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 AC004839.1-201ENST00000610269 501 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AL139123.1-201ENST00000612008 430 ntBASIC7.77□□□□□ -1.17
MSX1P28360 AC004836.1-201ENST00000623032 634 ntBASIC7.77□□□□□ -1.17
MSX1P28360 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
MSX1P28360 AC079801.1-201ENST00000623753 388 ntTSL 3 BASIC7.77□□□□□ -1.17
MSX1P28360 AL121594.6-201ENST00000633440 261 ntBASIC7.77□□□□□ -1.17
MSX1P28360 ZNRD1ASP-221ENST00000637794 1074 ntBASIC7.77□□□□□ -1.17
MSX1P28360 GALNTL5-201ENST00000392800 1719 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 TPH2-201ENST00000333850 2360 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 LINC00703-202ENST00000454152 2390 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 SYNPR-201ENST00000295894 2607 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 NF1P1-201ENST00000604105 2645 ntBASIC7.77□□□□□ -1.17
MSX1P28360 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 MIER1-201ENST00000355356 4818 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 C1S-205ENST00000406697 3076 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
MSX1P28360 AC005538.2-201ENST00000623215 1864 ntBASIC7.77□□□□□ -1.17
MSX1P28360 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
MSX1P28360 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
MSX1P28360 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 PPP2R2B-211ENST00000508545 2042 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 ZNF790-208ENST00000615484 2451 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 AC017104.4-201ENST00000636283 1592 ntBASIC7.76□□□□□ -1.17
MSX1P28360 RNF214-204ENST00000530849 2846 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 DCN-220ENST00000552962 1930 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 CRNKL1-202ENST00000377340 4406 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 L3MBTL4-203ENST00000400105 3546 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 SLC14A1-202ENST00000402943 1390 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
MSX1P28360 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
MSX1P28360 OR10J6P-201ENST00000289731 930 ntBASIC7.76□□□□□ -1.17
MSX1P28360 RIT1-201ENST00000368322 855 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 RNU6-1009P-201ENST00000390996 107 ntBASIC7.76□□□□□ -1.17
MSX1P28360 APLF-202ENST00000394342 1182 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 MIR1269A-201ENST00000408636 105 ntBASIC7.76□□□□□ -1.17
MSX1P28360 RN7SKP139-201ENST00000410411 293 ntBASIC7.76□□□□□ -1.17
MSX1P28360 RPS7P13-201ENST00000413955 498 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 FAM41AY1-201ENST00000421205 906 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 AL139413.1-201ENST00000421309 217 ntBASIC7.76□□□□□ -1.17
MSX1P28360 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 OFD1P2Y-201ENST00000421895 1149 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 MORF4L1P5-201ENST00000433352 961 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC008072.1-201ENST00000434254 824 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 MTND5P14-201ENST00000441481 1267 ntBASIC7.76□□□□□ -1.17
MSX1P28360 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 FAM41AY2-201ENST00000458627 906 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 OR9M1P-201ENST00000459641 921 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC020636.1-201ENST00000469268 565 ntTSL 4 BASIC7.76□□□□□ -1.17
MSX1P28360 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 RN7SL598P-201ENST00000494391 294 ntBASIC7.76□□□□□ -1.17
MSX1P28360 WBP1LP4-201ENST00000505043 344 ntBASIC7.76□□□□□ -1.17
MSX1P28360 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
MSX1P28360 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 AC113191.1-201ENST00000517759 403 ntBASIC7.76□□□□□ -1.17
MSX1P28360 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 AC090193.2-201ENST00000518970 537 ntTSL 4 BASIC7.76□□□□□ -1.17
MSX1P28360 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC7.76□□□□□ -1.17
MSX1P28360 AC091175.1-201ENST00000522168 572 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AP000907.3-201ENST00000530733 322 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AC123904.3-201ENST00000547218 814 ntBASIC7.76□□□□□ -1.17
MSX1P28360 TMEM106C-212ENST00000549288 321 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC7.76□□□□□ -1.17
MSX1P28360 AC091180.5-201ENST00000576461 382 ntTSL 5 BASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms