Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 AC087575.1-201ENST00000585087 229 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 AC026951.2-201ENST00000613847 241 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 FRMPD2-213ENST00000636244 4194 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 LPAL2-203ENST00000454031 2498 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 CASC19-246ENST00000641625 1606 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL5A1P20908 SNORA17A-201ENST00000391185 133 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 RPL21P50-201ENST00000417698 477 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 VDAC1P2-201ENST00000423609 850 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC010240.2-201ENST00000445363 1205 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.36□□□□□ -1.39
COL5A1P20908 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.36□□□□□ -1.39
COL5A1P20908 RN7SL208P-201ENST00000577964 296 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC091167.5-201ENST00000605689 894 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 AP001437.1-201ENST00000608783 456 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 AL512624.1-201ENST00000613638 469 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 SNORA17.5-201ENST00000630429 132 ntBASIC6.36□□□□□ -1.39
COL5A1P20908 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.36□□□□□ -1.39
COL5A1P20908 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
COL5A1P20908 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 AC007406.5-201ENST00000570140 3170 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 AC104964.2-201ENST00000562242 4641 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL5A1P20908 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL5A1P20908 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 AC004386.1-201ENST00000393214 761 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 AC104843.2-201ENST00000427666 297 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC6.35□□□□□ -1.39
COL5A1P20908 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC6.35□□□□□ -1.39
COL5A1P20908 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.35□□□□□ -1.39
COL5A1P20908 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 AC074386.1-201ENST00000476560 767 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 PRMT5P1-201ENST00000514351 598 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 PVT1-214ENST00000522875 922 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 AC011445.2-201ENST00000599274 173 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 AL953862.2-201ENST00000603089 820 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.35□□□□□ -1.39
COL5A1P20908 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.35□□□□□ -1.39
COL5A1P20908 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 MAPK10-323ENST00000641493 3207 ntBASIC6.35□□□□□ -1.39
COL5A1P20908 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.35□□□□□ -1.39
COL5A1P20908 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL5A1P20908 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC6.35□□□□□ -1.39
COL5A1P20908 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL5A1P20908 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
COL5A1P20908 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A1P20908 AL031985.1-201ENST00000392713 418 ntBASIC6.34□□□□□ -1.39
COL5A1P20908 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms