Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
VPS4AQ9UN37 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 AC008550.1-201ENST00000511500 884 ntBASIC19.18■□□□□ 0.66
VPS4AQ9UN37 AC091874.3-201ENST00000512672 1195 ntBASIC19.18■□□□□ 0.66
VPS4AQ9UN37 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.18■□□□□ 0.66
VPS4AQ9UN37 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4AQ9UN37 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.17■□□□□ 0.66
VPS4AQ9UN37 UBE2SP1-201ENST00000450587 669 ntBASIC19.17■□□□□ 0.66
VPS4AQ9UN37 AC026366.1-201ENST00000488803 879 ntBASIC19.17■□□□□ 0.66
VPS4AQ9UN37 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4AQ9UN37 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 SMG8-203ENST00000578922 2178 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 TCF3P1-201ENST00000423021 1937 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 AC007952.6-201ENST00000573168 2673 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 AC003957.1-201ENST00000625108 2673 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 MIR718-201ENST00000390190 70 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 FAM21FP-204ENST00000608637 956 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 KRT8P36-201ENST00000489121 1440 ntBASIC19.16■□□□□ 0.66
VPS4AQ9UN37 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS4AQ9UN37 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS4AQ9UN37 CDV3P1-201ENST00000471403 739 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms