Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 AL390719.1-204ENST00000412397 1219 ntBASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 AL596275.1-201ENST00000423464 877 ntBASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SOX15-203ENST00000570788 1093 ntBASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.22■□□□□ 0.67
CUEDC1Q9NWM3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 UNC93B5-201ENST00000530315 699 ntBASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CUEDC1Q9NWM3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 AL691432.2-201ENST00000607222 2038 ntBASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CUEDC1Q9NWM3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms